LOCUS BC030690 4996 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens sema domain, immunoglobulin domain (Ig), short basic
domain, secreted, (semaphorin) 3C, mRNA (cDNA clone MGC:26266
IMAGE:4824598), complete cds.
ACCESSION BC030690
VERSION BC030690.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4996)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4996)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: i Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32307182.
FEATURES Location/Qualifiers
source 1..4996
/db_xref="H-InvDB:HIT000041101"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26266 IMAGE:4824598"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4996
/gene="SEMA3C"
/gene_synonym="SemE"
/db_xref="GeneID:10512"
/db_xref="HGNC:HGNC:10725"
/db_xref="MIM:602645"
CDS 366..2621
/gene="SEMA3C"
/gene_synonym="SemE"
/codon_start=1
/product="sema domain, immunoglobulin domain (Ig), short
basic domain, secreted, (semaphorin) 3C"
/protein_id="AAH30690.1"
/db_xref="GeneID:10512"
/db_xref="HGNC:HGNC:10725"
/db_xref="MIM:602645"
/translation="MAFRTICVLVGVFICSICVKGSSQPQARVYLTFDELRETKTSEY
FSLSHHPLDYRILLMDEDQDRIYVGSKDHILSLNINNISQEALSVFWPASTIKVEECK
MAGKDPTHGCGNFVRVIQTFNRTHLYVCGSGAFSPVCTYLNRGRRSEDQVFMIDSKCE
SGKGRCSFNPNVNTVSVMINEELFSGMYIDFMGTDAAIFRSLTKRNAVRTDQHNSKWL
SEPMFVDAHVIPDGTDPNDAKVYFFFKEKLTDNNRSTKQIHSMIARICPNDTGGLRSL
VNKWTTFLKARLVCSVTDEDGPETHFDELEDVFLLETDNPRTTLVYGIFTTSSSVFKG
SAVCVYHLSDIQTVFNGPFAHKEGPNHQLISYQGRIPYPRPGTCPGGAFTPNMRTTKE
FPDDVVTFIRNHPLMYNSIYPIHKRPLIVRIGTDYKYTKIAVDRVNAADGRYHVLFLG
TDRGTVQKVVVLPTNNSVSGELILEELEVFKNHAPITTMKISSKKQQLYVSSNEGVSQ
VSLHRCHIYGTACADCCLARDPYCAWDGHSCSRFYPTGKRRSRRQDVRHGNPLTQCRG
FNLKAYRNAAEIVQYGVKNNTTFLECAPKSPQASIKWLLQKDKDRRKEVKLNERIIAT
SQGLLIRSVQGSDQGLYHCIATENSFKQTIAKINFKVLDSEMVAVVTDKWSPWTWASS
VRALPFHPKDIMGAFSHSEMQMINQYCKDTRQQHQQGDESQKMRGDYGKLKALINSRK
SRNRRNQLPES"
BASE COUNT 1585 a 916 c 979 g 1516 t
ORIGIN
1 agcgggtgct gggcggcgcg ccggggcagc cggagccgcg cgccgcggcg ctgtaatcgg
61 acaccaagag cgctcgcccc cggcctccgg ccactttcca ttcactccga ggtgcttgat
121 tgagcgacgc ggagaagagc tccgggtgcc gcggcactgc agcgctgaga ttcctttaca
181 aagaaactca gaggaccggg aagaaagaat ttcacctttg cgacgtgcta gaaaataagg
241 tcgtctggga aaaggactgg agacacaagc gcatccaacc ccggtagcaa actgatgact
301 tttccgtgct gatttctttc aacctcggta ttttcccttg gatattaact tgcatatctg
361 aagaaatggc attccggaca atttgcgtgt tggttggagt atttatttgt tctatctgtg
421 tgaaaggatc ttcccagccc caagcaagag tttatttaac atttgatgaa cttcgagaaa
481 ccaagacctc tgaatacttc agcctttccc accatccttt agactacagg attttattaa
541 tggatgaaga tcaggaccgg atatatgtgg gaagcaaaga tcacattctt tccctgaata
601 ttaacaatat aagtcaagaa gctttgagtg ttttctggcc agcatctaca atcaaagttg
661 aagaatgcaa aatggctggc aaagatccca cacacggctg tgggaacttt gtccgtgtaa
721 ttcagacttt caatcgcaca catttgtatg tctgtgggag tggcgctttc agtcctgtct
781 gtacttactt gaacagaggg aggagatcag aggaccaagt tttcatgatt gactccaagt
841 gtgaatctgg aaaaggacgc tgctctttca accccaacgt gaacacggtg tctgttatga
901 tcaatgagga gcttttctct ggaatgtata tagatttcat ggggacagat gctgctattt
961 ttcgaagttt aaccaagagg aatgcggtca gaactgatca acataattcc aaatggctaa
1021 gtgaacctat gtttgtagat gcacatgtca tcccagatgg tactgatcca aatgatgcta
1081 aggtgtactt cttcttcaaa gaaaaactga ctgacaataa caggagcacg aaacagattc
1141 attccatgat tgctcgaata tgtcctaatg acactggtgg actgcgtagc cttgtcaaca
1201 agtggaccac tttcttaaag gcgaggctgg tgtgctcggt aacagatgaa gacggcccag
1261 aaacacactt tgatgaatta gaggatgtgt ttctgctgga aactgataac ccgaggacaa
1321 cactagtgta tggcattttt acaacatcaa gctcagtttt caaaggatca gccgtgtgtg
1381 tgtatcattt atctgatata cagactgtgt ttaatgggcc ttttgcccac aaagaagggc
1441 ccaatcatca gctgatttcc tatcagggca gaattccata tcctcgccct ggaacttgtc
1501 caggaggagc atttacaccc aatatgcgaa ccaccaagga gttcccagat gatgttgtca
1561 cttttattcg gaaccatcct ctcatgtaca attccatcta cccaatccac aaaaggcctt
1621 tgattgttcg tattggcact gactacaagt acacaaagat agctgtggat cgagtgaacg
1681 ctgctgatgg gagataccat gtcctgtttc tcggaacaga tcggggtact gtgcaaaaag
1741 tggttgttct tcctactaac aactctgtca gtggcgagct cattctggag gagctggaag
1801 tctttaagaa tcatgctcct ataacaacaa tgaaaatttc atctaaaaag caacagttgt
1861 atgtgagttc caatgaaggg gtttcccagg tatctctgca ccgctgccac atctatggta
1921 cagcctgtgc tgactgctgc ctggcgcggg acccttattg cgcctgggat ggccattcct
1981 gttccagatt ctacccaact gggaaacgga ggagccgaag acaagatgtg agacatggaa
2041 acccactgac tcaatgcaga ggatttaatc taaaagcata cagaaatgca gctgaaattg
2101 tgcagtatgg agtaaaaaat aacaccactt ttctggagtg tgcccccaag tctccgcagg
2161 catctatcaa gtggctgtta cagaaagaca aagacaggag gaaagaggtt aagctgaatg
2221 aacgaataat agccacttca cagggactcc tgatccgctc tgttcagggt tctgaccaag
2281 gactttatca ctgcattgct acagaaaata gtttcaagca gaccatagcc aagatcaact
2341 tcaaagtttt agattcagaa atggtggctg ttgtgacgga caaatggtcc ccgtggacct
2401 gggccagctc tgtgagggct ttacccttcc acccgaagga catcatgggg gcattcagcc
2461 actcagaaat gcagatgatt aaccaatact gcaaagacac tcggcagcaa catcagcagg
2521 gagatgaatc acagaaaatg agaggggact atggcaagtt aaaggccctc atcaatagtc
2581 ggaaaagtag aaacaggagg aatcagttgc cagagtcata atattttctt atgtgggtct
2641 tatgcttcca ttaacaaatg ctctgtcttc aatgatcaaa ttttgagcaa agaaacttgt
2701 gctttaccaa ggggaattac tgaaaaaggt gattactcct gaagtgagtt ttacacgaac
2761 tgaaatgagc atgcattttc ttgtatgata gtgactagca ctagacatgt catggtcctc
2821 atggtgcata taaatatatt taacttaacc cagattttat ttatatcttt attcaccttt
2881 tcttcaaaat cgatatggtg gctgcaaaac tagaattgtt gcatccctca attgaatgag
2941 ggccatatcc ctgtggtatt cctttcctgc tttggggctt tagaattcta attgtcagtg
3001 attttgtata tgaaaacaag ttccaaatcc acagctttta cgtagtaaaa gtcataaatg
3061 catatgacag aatggctatc aaaagaaata gaaaaggaag acggcattta aagttgtata
3121 aaaacacgag ttattcataa agagaaaatg atgagttttt atggttccaa tgaaatatgt
3181 tggggttttt ttaagattgt aaaaataatc agttactggt atctgtcact gacctttgtt
3241 tccttattca ggaagataaa aatcagtaac ctaccccatg aagatatttg gtgggagtta
3301 tatcagtgaa gcagtttggt ttatattctt atgttatcac cttccaaaca aaagcactta
3361 ctttttttgg aagttattta atttatttta gactcaaaga atataatctt gcactactca
3421 gttattactg tttgttctct tattccctag tctgtgtggc aaattaaaca atataagaag
3481 gaaaaatttg aagtattaga cttctaaata aggggtgaaa tcatcagaaa gaaaaatcaa
3541 ggtagaaact actaattttt taagaggaat ttataacaaa tatggctagt tttcaacttc
3601 agtactcaaa ttcaatgatt cttcctttta ttaaaaccag tctcagatat catactgatt
3661 tttaagtcaa cactatatat tttatgatct tttcagtgtg atggcaaggt gcttgttatg
3721 tctagaaagt aagaaaacaa tatgaggaga cattctgtct ttcaaaaggt aatggtacat
3781 acgttcactg gtctctaagt gtaaaagtag taaattttgt gatgaataaa ataattatct
3841 cctaattgta tgttagaata attttattag aataatttca tactgaaatt attttctcca
3901 aataaaaatt agatggaaaa atgtgaaaaa aattattcat gctctcatat atattttaaa
3961 aacactactt tgctttttta tttacctttt aagacatttt catgcttcca ggtaaaaaca
4021 gatattgtac catgtaccta atccaaatat catataaaca ttttatttat agttaataat
4081 ctatgatgaa ggtaattaaa gtagattatg gcctttttaa gtattgcagt ctaaaacttc
4141 aaaaactaaa atcattgtca aaattaatat gattattaat cagaatatca gaatatgatt
4201 cactatttaa actatgataa attatgataa tatatgagga ggcctcgcta tagcaaaaat
4261 agttaaaatg ctgacataac accaaacttc attttttaaa aaatctgttg ttccaaatgt
4321 gtataatttt aaagtaattt ctaaagcagt ttattataat ggtttgcctg cttaaaaggt
4381 ataattaaac ttcttttctc ttctacattg acacacagga atgtgtcaat gtaaagccaa
4441 aaccatcttc tgtgtttatg gccaatctat tctcaaagtt aaaagtaaaa ttgtttcaga
4501 gtcacagttc cctttatttc acataagccc aaactgatag acagtaacgg tgtttagttt
4561 tatactatat ttgtgctatt taattctttc tattttcaca attattaaat tgtgtacact
4621 ttcattactt ttaaaaatgt agaaattctt catgaacata actctgctga atgtaaaaga
4681 aaattttttt tcaaaaatgc tgttaatgta tactactggt ggttgattgg ttttatttta
4741 tgtagctcga caattcagtg acttaatatc tattccattt gtattgtaca taaaattttc
4801 tagaaataca cttttttcca aagtgtaagt ttgtgaatag attttagcat gatgaaactg
4861 tcataatggt gaatgttcaa tctgtgtaag aaaacaaact aaatgtagtt gtcacactaa
4921 aatttaattg gatattgatg aaatcattgg cctggcaaaa taaaacatgt tgaattcccc
4981 aaaaaaaaaa aaaaaa
//