LOCUS BC030592 3912 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens ArfGAP with FG repeats 1, mRNA (cDNA clone MGC:26523
IMAGE:4836885), complete cds.
ACCESSION BC030592
VERSION BC030592.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3912)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3912)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC030592.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 34 Row: k Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38570131.
FEATURES Location/Qualifiers
source 1..3912
/db_xref="H-InvDB:HIT000041059"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26523 IMAGE:4836885"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3912
/gene="AGFG1"
/gene_synonym="RAB"
/gene_synonym="RIP"
/db_xref="GeneID:3267"
/db_xref="HGNC:HGNC:5175"
/db_xref="MIM:600862"
CDS 85..1773
/gene="AGFG1"
/gene_synonym="RAB"
/gene_synonym="RIP"
/codon_start=1
/product="ArfGAP with FG repeats 1"
/protein_id="AAH30592.1"
/db_xref="GeneID:3267"
/db_xref="HGNC:HGNC:5175"
/db_xref="MIM:600862"
/translation="MAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTV
GSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSS
AIPDFRDPQKVKEFLQEKYEKKRWYVPPEQAKVVASVHASISGSSASSTSSTPEVKPL
KSLLGDSAPTLHLNKGTPSQSPVVGRSQGQQQEKKQFDLLSDLGSDIFAAPAPQSTAT
ANFANFAHFNSHAAQNSANADFANFDAFGQSSGSSNFGGFPTASHSPFQPQTTGGSAA
SVNANFAHFDNFPKSSSADFGTFNTSQSHQTASAVSKVSTNKAGLQTADKYAALANLD
NIFSAGQGGDQGSGFGTTGKAPVGSVVSVPSQSSASSDKYAALAELDSVFSSAATSSN
AYTSTSNASSNVFGTVPVVASAQTQPASSSVPAPFGATPSTNPFVAAAGPSVASSTNP
FQTNARGATAATFGTASMSMPTGFGTPAPYSLPTSFSGSFQQPAFPAQAAFPQQTAFS
QQPNGAGFAAFGQTKPVVTPFGQVAAAGVSSNPFMTGAPTGQFPTGSSSTNPFL"
BASE COUNT 1140 a 801 c 762 g 1209 t
ORIGIN
1 agggaggccc gtgggaccgc gggcccccgg cgcagcgctg cccggctccc ggccctgccg
61 gcctcctccc ttggcgccgc ggccatggcg gccagcgcga agcggaagca ggaggagaag
121 cacctgaaga tgctgcggga catgaccggc ctcccgcaca accgaaagtg cttcgactgc
181 gaccagcgcg gccccaccta cgttaacatg acggtcggct ccttcgtgtg tacctcctgc
241 tccggcagcc tgcgaggatt aaatccacca cacagggtga aatctatctc catgacaaca
301 ttcacacaac aggaaattga attcttacaa aaacatggaa atgaagtctg taagcagatt
361 tggctaggat tatttgatga tagatcttca gcaattccag acttcaggga tccacaaaaa
421 gtgaaagagt ttctacaaga aaagtatgaa aagaaaagat ggtatgtccc gccagaacaa
481 gccaaagtcg tggcatcagt tcatgcatct atttcagggt cctctgccag tagcacaagc
541 agcacacctg aggtcaaacc actgaaatct cttttagggg attctgcacc aacactgcac
601 ttaaataagg gcacacctag tcagtcccca gttgtaggtc gttctcaagg gcagcagcag
661 gagaagaagc aatttgacct tttaagtgat ctcggctcag acatctttgc tgctccagct
721 cctcagtcaa cagctacagc caattttgct aactttgcac atttcaacag tcatgcagct
781 cagaattctg caaatgcaga ttttgcaaac tttgatgcat ttggacagtc tagtggttcg
841 agtaattttg gaggtttccc cacagcaagt cactctcctt ttcagcccca aactacaggt
901 ggaagtgctg catcagtaaa tgctaatttt gctcattttg ataacttccc caaatcctcc
961 agtgctgatt ttggaacctt caatacttcc cagagtcatc aaacagcatc agctgttagt
1021 aaagtttcaa cgaacaaagc tggtttacag actgcagaca aatatgcagc acttgctaat
1081 ttagacaata tcttcagtgc cgggcaaggt ggtgatcagg gaagtggctt tgggaccaca
1141 ggtaaagctc ctgttggttc tgtggtttca gttcccagtc agtcaagtgc atcttcagac
1201 aagtatgcag ctctggcaga actagacagc gttttcagtt ctgcagccac ctccagtaat
1261 gcgtatactt ccacaagtaa tgctagcagc aatgtttttg gaacagtgcc agtggttgct
1321 tctgcacaga cacagcctgc ttcatcaagt gtgcctgctc catttggagc tacgccttcc
1381 acaaatccat ttgttgctgc tgctggtcct tctgtggcat cttctacaaa cccatttcag
1441 accaatgcca gaggagcaac agcggcaacc tttggcactg catccatgag catgcccacg
1501 ggattcggca ctcctgctcc ctacagtctt cccaccagct ttagtggcag ctttcagcag
1561 cctgcctttc cagcccaagc agctttccct caacagacag ctttttctca acagcccaat
1621 ggtgcaggtt ttgcagcatt tggacaaaca aagccagtag taaccccttt tggtcaagtt
1681 gcagctgctg gagtatctag taatcctttt atgactggtg caccaacagg acaatttcca
1741 acaggaagct catcaaccaa tcctttctta tagccttata tagacaattt actggaacga
1801 acttttatgt ggtcacatta catctctcca cctcttgcac tgttgtcttg tttcactgat
1861 cttagcttta aacacaagag aagtctttaa aaagcctgca ttgtgtatta aacaccaggt
1921 aatatgtgca aaaccgaggg ctccagtaac accttctaac ctgtgaattg gcagaaaagg
1981 gtagcggtat catgtatatt aaaattggct aatattaagt tattgcagat accacattca
2041 ttatgctgca gtactgtaca tatttttctt agaaattagc tatttgtgca tatcagtatt
2101 tgtaacttta acacattgtt atgtgagaaa tgttactggg gaaatagatc agccactttt
2161 aaggtgctgt catatatctt ggaatgaatg acctaaaatc attttaacca ttgctactgg
2221 aaagtaacag agtcaaaatt ggaaggtttt attcattctt gaatttttcc tttctaaaga
2281 gctcttctat ttatacatgc ctaaattctt ttaaaatgta gagggatacc tgtctgcata
2341 ataaagctga tcatgttttg ctacagtttg caggtgaaaa aaaataaata ttataaaata
2401 tgctattgtt tttgtgttct tgctgcaatg cctttaccaa agtggcctta aatatgagta
2461 gtgaattgag aacatcttga attcttaaaa gacttcttag tgacttttta taaaaaggcc
2521 atgtagaaaa tttattaaaa ctactatgac tgctacattc aggaatatgc cagtggtaaa
2581 gcatttaaat gtagcttgtc agatttacca taatcctact aatttctttg cagcttatta
2641 attttgtgaa atttgtatat atgaagaatt tgcatgtatg tgtatttaca aatttttcta
2701 agtatcttga attctcagac tgcaaaaggc ctattttaac tattgatttt tttttaaaaa
2761 aattgtcttt gaatgtattg gaagtagaca tgcattaact gtgacattat tgcacctcag
2821 tttttttctt tctttttttg ggcaaactga tattatctat aggatatttg tttatgtttg
2881 ttttttgggg gaaagaaact ggaactcagt gttaccttaa agttacggaa tactttgttt
2941 taaaggaaaa gataataagt ttagttatat ctttttgtta atattcaaat gaacttgttt
3001 aagtatctat gtacagtaat gcctcattca tctagaggta atctggcagt cttgtgaaaa
3061 ccgaacacaa ctcagaaact tggaatcgtt tttttttaaa aatgcctctg agcaacccat
3121 ataagtcaca aagtctgtgt gttagagctt atgcatttgt ttttatgaga gattttaata
3181 aatttaatta tttgcttgtc cagactatag catattagct gtttagaagg gatggcttga
3241 aaggaaggag actgaaaaac actctgagag catacactgt ccaaggccat tagtgtaagg
3301 accgctaccc agcctagagg acatcactat actacatcat ctgatgatta ttctttatta
3361 tgcctctagg taattaagta aaggtgaaat tgcatacaca gatatgtagt acatatttta
3421 aaagttttat cttaaattga ttaaaacttt ttaaaaagct ttggtattaa aagaggtaaa
3481 catcagtttc ctcaaacatt ttattcatgt tgaatgcctt tttgcaatga tgactgagtt
3541 gttatcatag tattttaaaa cctgtatagt gttttagact tgttaaaaca ttgctgtcta
3601 gtgtacatct agctaaaagt gtggtttatc taaaccgttt taataagcaa gatgactggg
3661 aaatctctgc cccttttctg agcagtatgc ctcttctttt agaattaaat gaatgctgca
3721 caggtccaga tgtgtgttga tgtagacttg aaatgtctcc acattttgga ggacttcctc
3781 agcccttttc attgagggaa aatatatttg aatttctgtt ttagattgta tcgggtccca
3841 gttgattcat gtgtacaaag ttatgctacc taattacaga ccattaccca aataccaaaa
3901 aaaaaaaaaa aa
//