LOCUS BC030268 3745 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens chondroitin sulfate N-acetylgalactosaminyltransferase
2, mRNA (cDNA clone MGC:40204 IMAGE:5223190), complete cds.
ACCESSION BC030268
VERSION BC030268.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3745)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3745)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: l Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24429591.
FEATURES Location/Qualifiers
source 1..3745
/db_xref="H-InvDB:HIT000041007"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:40204 IMAGE:5223190"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3745
/gene="CSGALNACT2"
/gene_synonym="CSGalNAcT-2"
/gene_synonym="GALNACT-2"
/gene_synonym="GALNACT2"
/gene_synonym="PRO0082"
/db_xref="GeneID:55454"
/db_xref="HGNC:HGNC:24292"
CDS 336..1964
/gene="CSGALNACT2"
/gene_synonym="CSGalNAcT-2"
/gene_synonym="GALNACT-2"
/gene_synonym="GALNACT2"
/gene_synonym="PRO0082"
/codon_start=1
/product="chondroitin sulfate
N-acetylgalactosaminyltransferase 2"
/protein_id="AAH30268.1"
/db_xref="GeneID:55454"
/db_xref="HGNC:HGNC:24292"
/translation="MPRRGLILHTRTHWLLLGLALLCSLVLFMYLLECAPQTDGNASL
PGVVGENYGKEYYQALLQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNV
GANGIGYQSNKEQAPSDLLEFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQLE
MGLTRHPEEKPVRKDKRDELVEVIEAGLEVINNPDEDDEQEDEEGPLGEKLIFNENDF
VEGYYRTERDKGTQYELFFKKADLTEYRHVTLFRPFGPLMKVKSEMIDITRSIINIIV
PLAERTEAFVQFMQNFRDVCIHQDKKIHLTVVYFGKEGLSKVKSILESVTSESNFHNY
TLVSLNEEFNRGRGLNVGARAWDKGEVLMFFCDVDIYFSAEFLNSCRLNAEPGKKVFY
PVVFSLYNPAIVYANQEVPPPVEQQLVHKKDSGFWRDFGFGMTCQYRSDFLTIGGFDM
EVKGWGGEDVHLYRKYLHGDLIVIRTPVPGLFHLWHEKRCADELTPEQYRMCIQSKAM
NEASHSHLGMLVFREEIETHLHKQAYRTNSEAVG"
BASE COUNT 1173 a 631 c 793 g 1148 t
ORIGIN
1 cggcggcggg cccaaggcgt gaggcgccgc ccgggtgtcc ccgcggcgca ggaggcggtg
61 gagcgcagag cgggcgagcg cgaaaaatca ctaccaatat aatggatttt atatatcaga
121 ttgctttatt ctggatatca tggtaacaat acagaaagta tacataattt cccatttctg
181 caagtagtca tgactgctga agaaagaaaa acttaaagct acggcagaat tattttatgg
241 aaattctgat tttgttttta atttttgata actttttact aaaggtatga acacacaaag
301 agcttatttt gttaggcaaa tacacattaa taagaatgcc tagaagagga ctgattcttc
361 acacccggac ccactggttg ctgttgggcc ttgctttgct ctgcagtttg gtattattta
421 tgtacctcct ggaatgtgcc ccccagactg atggaaatgc atctcttcct ggtgttgttg
481 gggaaaatta tggtaaagag tattatcaag ccctcctaca ggaacaagaa gaacattatc
541 agaccagggc aaccagtctg aaacgccaaa ttgcccaact aaaacaagaa ttacaagaaa
601 tgagtgagaa gatgcggtca ctgcaagaaa gaaggaatgt aggggctaat ggcataggct
661 atcagagcaa caaagagcaa gcacctagtg atcttttaga gtttcttcat tcccaaattg
721 acaaagctga agttagcata ggggccaaac tacccagtga gtatggggtc attccctttg
781 aaagttttac cttaatgaaa gtatttcaat tggaaatggg tctcactcgc catcctgaag
841 aaaagccagt tagaaaagac aaacgagatg aattggtgga agttattgaa gcgggcttgg
901 aggtcattaa taatcctgat gaagatgatg aacaagaaga tgaggagggt ccccttggag
961 agaaactgat atttaatgaa aatgacttcg tagaaggtta ttatcgcact gagagagata
1021 agggcacaca gtatgaactc ttttttaaga aagcagacct tacggaatat agacatgtga
1081 ccctcttccg cccttttgga cctctcatga aagtgaagag tgagatgatt gacatcacta
1141 gatcaattat taatatcatt gtgccacttg ctgaaagaac tgaagcattt gtacaattta
1201 tgcagaactt cagggatgtt tgtattcatc aagacaagaa gattcatctc acagtggtgt
1261 attttggtaa agaaggactg tctaaagtca agtctatcct agaatctgtc accagtgagt
1321 ctaattttca caattacacc ttggtctcat tgaatgaaga atttaatcgt ggacgaggac
1381 taaatgtggg tgcccgagct tgggacaagg gagaggtctt gatgtttttc tgtgatgttg
1441 atatctattt ctcagccgaa ttccttaaca gctgccggtt aaatgctgag ccaggtaaga
1501 aggtgtttta ccctgtggtg ttcagtcttt acaatcctgc cattgtttat gccaaccagg
1561 aagtgccacc acctgtggag cagcagctgg ttcacaaaaa ggattctggc ttttggcgag
1621 attttggctt tggaatgact tgtcagtatc gttcagattt cctgaccatt ggtggatttg
1681 acatggaagt gaaaggttgg ggtggagaag atgttcatct ttatcgaaaa tacttacatg
1741 gtgacctcat tgtgattcgg actccggttc ctggtctttt ccacctctgg catgaaaagc
1801 gctgtgctga tgagctgacc cccgagcagt accgcatgtg catccagtct aaagccatga
1861 atgaggcctc tcactcccac ctgggaatgc tggtcttcag ggaggaaata gagacgcatc
1921 ttcataaaca ggcatacagg acaaacagtg aagctgttgg ttgaaatcat aattaatgcg
1981 ttactgtatg aaccacaaaa cagcactatt tatttagcct tacttctact tccagatgca
2041 gtgcctcttt tggagaagac atgtttattt ttcatgttct ttctgacatt actttagcaa
2101 ttcaacttga tgtgagaaga aaaaacaaat gtttcaacac aaaatctctg ttttgtgaga
2161 atactgcact atggaataat tgacaaattg aaatctcata tttgtcccaa aagttgtttt
2221 gagttagttc tacctggtgc ccatgttctg attgtgtgtg ggattgcatg gtgtcctgat
2281 tgcatctagg tggagcggat ggaatgtgct gggccactgt tgggtggaga gcagcacatt
2341 cttacagagg agatggagcg ttatgagcat agtatgtgga taggtatctt cacctgcccg
2401 cccctgagtc agcctccttg acttgatagc ttgaagaatc cttttccact gaaatagagg
2461 ataattaatt gacacatctg aaatccccaa tcaatcaatc aagagaaagg tagaactaaa
2521 aactccttaa cttactgttg cttacacccc tgaaagtctg tttttaagca aatgggtaat
2581 agtagaaaat aggttagaat ctatggcttg attaaaaata tgttattaca ttatcatgtt
2641 caggattagg attagtagtc agttgctgta aactattttg aacaaacaga aaagaacacg
2701 gaaacatttt taacagagca tttaattatg ttggaataca ggatcctagc tctgtctggg
2761 aacattagtt tatgtgagcc agctctatca gggtcttccc atggtggttc agaatagatg
2821 agcatagcat ggttttgttt gtttttgctt tcaattttct aatttggcat ggatccatat
2881 gtatttacta tcctttttct aatatattaa tatatgctac atttgtattt gcattactat
2941 aatactttga gttgaaaaag agtttcattg tggagagaaa aagcaaatgg tatgccacaa
3001 gatcactctg atttgagaaa agggaggagg ggaagatagt ctgaatggaa atctgaaata
3061 cggaatgttt tagagaaata tgtcacttgc atatagaatg ttttaattga ggtataaatt
3121 aatgagacaa agtgaaaaag aaattatatt cagataggac tgcactacat tatttgtcac
3181 acatggatct gttaccatca ggtcaattcc tagtatgcat aaatttttta acccttttaa
3241 aagagaccta tgttgaaaac ccctgaaaat tcactgaaga aaaatcatta ctctttttct
3301 cagtaaatca tatcatctga aatattacaa atttcaaatt tctaggtgct atattaattc
3361 aatattacaa taactcttac ctaattattc ttacaagttt taagttgtgg tagtttagtg
3421 atttttttaa aagatgtgtg aaatgttctc tgcaaaataa ttcaggccac tgtctccttt
3481 tatatattat tataattatt tattatgaag accagtgaat tacgatattt aaagtgagag
3541 aacttaatta tttgcaaagg taagttacag cttgtttttt gagagaatca aatgagttta
3601 cttttgttcc tgttgttttt aactagcttt aagtttaaag atggaagcta agcaatggaa
3661 atgctatacg tttttgacat ttattaaatg gtaccaataa agtattttat taccaaaagt
3721 taaaaaaaaa aaaaaaaaaa aaaaa
//