LOCUS BC030231 667 bp mRNA linear HUM 19-JAN-2018
DEFINITION Homo sapiens xylulokinase homolog (H. influenzae), mRNA (cDNA clone
IMAGE:5309777), partial cds.
ACCESSION BC030231
VERSION BC030231.3
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 667)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 667)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
REFERENCE 3 (bases 1 to 667)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2018) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK Sequence update by database staff to remove vector contamination
COMMENT On Jan 19, 2018 this sequence version replaced BC030231.2.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: p Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18860917.
FEATURES Location/Qualifiers
source 1..667
/db_xref="H-InvDB:HIT000092090"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5309777"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>667
/gene="XYLB"
/gene_synonym="FLJ10343"
/gene_synonym="FLJ12539"
/gene_synonym="FLJ22075"
/db_xref="GeneID:9942"
/db_xref="MIM:604049"
CDS 55..>667
/gene="XYLB"
/gene_synonym="FLJ10343"
/gene_synonym="FLJ12539"
/gene_synonym="FLJ22075"
/codon_start=1
/product="XYLB protein"
/protein_id="AAH30231.1"
/db_xref="GeneID:9942"
/db_xref="MIM:604049"
/translation="MAEHAPRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLP
EFGTQGGVHVHKDGLTVTSPVLMWVQALDIILEKMKASGFEFSQVLALSGAGQQHGSI
YWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTTAQCRQLEAAVGGAQALS
CLTGSRAYERFTGNQIAKIYQQNPMASMTFSKKKKKKKKKKKKK"
misc_feature 82..606
/gene="XYLB"
/gene_synonym="FLJ10343"
/gene_synonym="FLJ12539"
/gene_synonym="FLJ22075"
/note="XylB; Region: Sugar (pentulose and hexulose)
kinases [Carbohydrate transport and metabolism]"
/db_xref="CDD:COG1070"
BASE COUNT 175 a 172 c 185 g 135 t
ORIGIN
1 acgccgcgtg gcggacggac ggactgacgg acgcgcagcc ttacccgaaa ggccatggcg
61 gagcacgccc ctcgccgctg ctgcctgggc tgggacttca gcacgcagca ggtaaaggtt
121 gttgctgttg atgcagagtt gaatgtcttc tatgaggaaa gtgtgcattt tgacagagat
181 cttccagaat ttgggactca gggcggtgtt catgtgcaca aggatgggct gacggtcact
241 tctccagtac taatgtgggt ccaggcactg gatatcatct tggagaagat gaaggcttcg
301 ggcttcgaat tctctcaagt cctagccttg tccggggcgg gccagcaaca cggaagtata
361 tactggaagg ctggagccca gcaggcactg acaagcttat caccagacct ccggctacac
421 cagcagcttc aggactgttt ctccatcagc gactgcccgg tgtggatgga ctccagcacc
481 acagcccagt gccgccagct ggaggctgct gtgggtggtg ctcaggctct cagctgcctc
541 acggggtccc gtgcctatga gcgttttaca gggaaccaaa ttgcaaaaat ttaccagcag
601 aaccccatgg cctccatgac tttttcaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
661 aaaaaaa
//