LOCUS BC030011 4088 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens synaptic vesicle glycoprotein 2B, mRNA (cDNA clone
MGC:26452 IMAGE:4826206), complete cds.
ACCESSION BC030011
VERSION BC030011.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4088)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4088)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC030011.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: n Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41281508
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..4088
/db_xref="H-InvDB:HIT000050986"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26452 IMAGE:4826206"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4088
/gene="SV2B"
/gene_synonym="HsT19680"
/db_xref="GeneID:9899"
/db_xref="HGNC:HGNC:16874"
/db_xref="MIM:185861"
CDS 529..2580
/gene="SV2B"
/gene_synonym="HsT19680"
/codon_start=1
/product="SV2B protein"
/protein_id="AAH30011.1"
/db_xref="GeneID:9899"
/db_xref="HGNC:HGNC:16874"
/db_xref="MIM:185861"
/translation="MDDYKYQDNYGGYAPSDGYYRGNESNPEEDAQSDVTEGHDEEDE
IYEGEYQGIPHPDDVKAKQAKMAPSRMDSLRGQTDLMAERLEDEEQLAHQYETIMDEC
GHGRFQWILFFVLGLALMADGVEVFVVSFALPSAEKDMCLSSSKKGMLGMIVYLGMMA
GAFILGGLADKLGRKRVLSMSLAVNASFASLSSFVQGYGAFLFCRLISGIGIGGALPI
VFAYFSEFLSREKRGEHLSWLGIFWMTGGLYASAMAWSIIPHYGWGFSMGTNYHFHSW
RVFVIVCALPCTVSMVALKFMPESPRFLLEMGKHDEAWMILKQVHDTNMRAKGTPEKV
FTVSNIKTPKQMDEFIEIQSSTGTWYQRWLVRFKTIFKQVWDNALYCVMGPYRMNTLI
LAVVWFAMAFSYYGLTVWFPDMIRYFQDEEYKSKMKVFFGEHVYGATINFTMENQIHQ
HGKLVNDKFTRMYFKHVLFEDTFFDECYFEDVTSTDTYFKNCTIESTIFYNTDLYEHK
FINCRFINSTFLEQKEGCHMDLEQDNDFLIYLVSFLGSLSVLPGNIISALLMDRIGRL
KMIGGSMLISAVCCFFLFFGNSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRA
TAFGILNGLCKFGAILGNTIFASFVGITKVVPILLAAASLVGGGLIALRLPETREQVL
M"
BASE COUNT 1081 a 931 c 983 g 1093 t
ORIGIN
1 gctgctctgc ctgcatccgg aggcggccgc cagcggattt gccacccagg tcctaagact
61 ctcagtccag agagggccct gccccacacc cagaaggaag gaatgctgcc cagagatgac
121 cagaggaatc tagacagagc ataaccttcg gtggcaggac aaatcaggcc agcacgcagt
181 ctgccaagtc ctgctcgctc cctgtcaaga aaaacagctg gatccatttc taatcaacac
241 ttcccaacgc aacacttctg agtctctgaa ggagaccaga gcttgaaact ttccagactt
301 ccaacagaca tcgagtgcaa aaggatattt aggttgtctt tgcacaaatc tggttgattt
361 gagagataaa ggggggggga accagtgtga ctttcaccta agaagtcaca tgaacatatt
421 tcacatttga actacataat gaatgatggt tattgaaata gcccaaacct ctaccacaga
481 gcgagggata tagctcaagg ggcaaccagg cagtcgcaga accaaggaat ggatgactac
541 aagtatcagg acaattatgg gggctatgct cccagtgatg gctattaccg cggcaatgag
601 tccaacccag aagaagatgc acagagtgat gtcaccgaag gccatgatga ggaagacgag
661 atctatgagg gcgagtacca gggtatccct cacccagatg atgtcaaggc caagcaggcc
721 aagatggcgc cctccagaat ggacagcctt cggggccaga cagacctgat ggctgagagg
781 ctggaagatg aggagcagtt ggcccatcag tacgagacca tcatggatga gtgtggccat
841 ggccgcttcc agtggatcct ctttttcgtc ttgggtttgg ccctgatggc cgatggggtg
901 gaagtgttcg tggtgagttt tgccctgccc agtgcagaga aggacatgtg tctgtccagt
961 tccaaaaaag gaatgctagg gatgatagtc tacttgggaa tgatggcggg cgccttcatc
1021 ctgggaggcc tggctgataa gctgggaagg aagcgagtcc tcagcatgtc tctggccgtc
1081 aatgcctcct tcgcctccct ctcttccttc gtgcagggat atggagcctt cctcttctgc
1141 cgactcatct caggcatcgg tattgggggt gctctaccga ttgtttttgc ctatttttct
1201 gaattcttgt ctcgggagaa gcgaggagaa cacctcagtt ggctgggcat cttctggatg
1261 actgggggcc tgtacgcatc tgccatggcc tggagcatca tcccacacta tggctggggc
1321 ttcagcatgg ggaccaatta ccacttccat agctggagag tgtttgtcat cgtctgtgct
1381 ctgccctgca ccgtgtccat ggtggccctg aagttcatgc cagagagccc aaggtttctg
1441 ctagagatgg gcaaacatga tgaagcctgg atgattctca agcaagtcca tgacaccaac
1501 atgagagcta aggggacccc agagaaagtg ttcacggttt ccaacatcaa aactcccaag
1561 caaatggatg aattcattga gatccaaagt tcaacaggaa cctggtacca gcgctggctg
1621 gtcagattca agaccatttt caagcaggtc tgggataatg ccctgtactg tgtgatgggg
1681 ccctacagaa tgaatacact gattctggcc gtggtttggt ttgccatggc attcagttac
1741 tatggactga cagtttggtt tcctgatatg atccgctatt ttcaagatga agaatacaag
1801 tctaaaatga aggtgttttt tggtgagcat gtgtacggcg ccacaatcaa cttcacgatg
1861 gaaaatcaga tccaccaaca tgggaaactt gtgaatgata agttcacaag aatgtacttt
1921 aaacatgtac tctttgagga cacattcttt gacgagtgct attttgaaga cgtaacatca
1981 acagatacct acttcaaaaa ttgtaccatt gaatcaacca tcttttacaa cacagacctc
2041 tacgagcaca agttcatcaa ctgtcggttt atcaactcca ccttcctgga gcagaaggag
2101 ggctgccaca tggacttgga gcaagataat gacttcctga tttacctcgt cagcttcctg
2161 ggcagcctgt ctgtcttacc cgggaacatc atttctgccc tgctcatgga tagaattgga
2221 aggctcaaga tgattggtgg ctccatgcta atctctgcag tctgctgctt cttcctgttt
2281 tttggcaaca gtgagtctgc aatgatcggc tggcagtgcc tgttctgtgg gacaagcatt
2341 gcagcctgga atgctctgga tgtgatcaca gtggagctgt atcccaccaa ccagagagca
2401 acagccttcg gcattctcaa tggattatgc aaatttggcg ccatcctggg aaacaccatc
2461 tttgcttctt ttgttgggat aaccaaagtg gtccccatcc ttctggctgc tgcttctctg
2521 gttgggggtg gcctgattgc ccttcgactg ccagagactc gagaacaggt cctgatgtga
2581 acaacctatg ggaaaaggaa aggtcgagag aatcttgtcc aggacactga aatgcatcca
2641 cacttcctgc ctatcacggt ccggaggaca ccttggatag cacgggagga gaagttgact
2701 ttgtgacccc tagtttagga cccacttcag ctgtcaatat gtttgtaact caggtgactg
2761 atttgggggt gccctgagcc acccttagaa tcacagagct gcgtgtttaa cttcaagtct
2821 tcccagtcca aggcagggag aggattctcc agtgagtgca cacactatgc gaggagcaag
2881 catttctcta agtcaagtgc aaggacttaa cttgcgtttg aaaaggaatt agagggtcag
2941 aaacacccag gttcctccag aaagctcctt ggagcccaac aacttaacaa atcaacttgg
3001 ctggaagtta gagtcattat atgaagattg ggcttgaagt atatattttt gcatttaaaa
3061 gtatcaccta tcatattttc cactcgaaaa ttgacatagt agcattgagg atacgctgat
3121 ctagaaagcc aagtatttga gcaacatcta tagagatcta cttttctcct atgtctccta
3181 ggctttccat gataattagg gagagaagac atattgactc tgactggaca ccctgattcc
3241 tccaaatata tataccactg tgtattaatc tttctctcag tgttttatag gagtactaac
3301 atttattgct ctgtcaataa tgaaaggctc gatgtaatat agctgtaatt tactttccat
3361 atgaatacag tggctaggtt cataaaagag aattgtgtga gtctgggatt accacatcta
3421 aaacattatt ctttaatggg ataatacaat tcattgagca gctaccactt aaaaaacttg
3481 caggacagtt agagcctgca tttctagtta agatggatct tgtaaattta aaattggatt
3541 aacattggag tgctggggtg gctgcaataa tttgggggct aactccattt ggtttccaag
3601 atctcacttc tgcattatct ttatggctct ttaaaccagc cacctagcca atcaagggca
3661 attcccatct catccatcac tcaggtcttt gtaaagggtg cagccaagct ctgcagactt
3721 ttgcaggatt gtctagcctg agtaccgggc tacttcttaa atgccgtcac tcctgctgag
3781 ataaatgcgt ctttaaaaat agtctctgtg gcaggtcact gggggacaat gtacagcatt
3841 ctggccatcc acttcttttt cacttcatgt tctaccccaa gagactcccg atgtcggctg
3901 tggagggtta aagggatgag gctttccttt gtttagcaaa tctgttcaca gttcttgatg
3961 atgtatttta tgatgcccag cttggaaata gttgctttcc atagtctcaa ctgtattgtg
4021 tcatctcctg atgctgattt ttgatctttt gttttattaa aaataattag tgaaaaaaaa
4081 aaaaaaaa
//