LOCUS BC029641 1664 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens farnesyl-diphosphate farnesyltransferase 1, mRNA (cDNA
clone MGC:25135 IMAGE:4514761), complete cds.
ACCESSION BC029641
VERSION BC029641.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1664)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1664)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: h Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1664
/db_xref="H-InvDB:HIT000040851"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:25135 IMAGE:4514761"
/tissue_type="Bladder, transitional cell papilloma"
/clone_lib="NIH_MGC_93"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1664
/gene="FDFT1"
/gene_synonym="DGPT"
/gene_synonym="ERG9"
/gene_synonym="SQS"
/gene_synonym="SS"
/db_xref="GeneID:2222"
/db_xref="HGNC:HGNC:3629"
/db_xref="MIM:184420"
CDS 33..1286
/gene="FDFT1"
/gene_synonym="DGPT"
/gene_synonym="ERG9"
/gene_synonym="SQS"
/gene_synonym="SS"
/codon_start=1
/product="farnesyl-diphosphate farnesyltransferase 1"
/protein_id="AAH29641.1"
/db_xref="GeneID:2222"
/db_xref="HGNC:HGNC:3629"
/db_xref="MIM:184420"
/translation="MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCY
KYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHS
FLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDK
HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIR
DYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITY
LSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAV
KAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVML
LAALSWQYLTTLSQVTEDYVQTGEH"
BASE COUNT 450 a 386 c 409 g 419 t
ORIGIN
1 gtcgcgcccg ggagtccgcc gcctgcgcca ggatggagtt cgtgaaatgc cttggccacc
61 ccgaagagtt ctacaacctg gtgcgcttcc ggatcggggg caagcggaag gtgatgccca
121 agatggacca ggactcgctc agcagcagcc tgaaaacttg ctacaagtat ctcaatcaga
181 ccagtcgcag tttcgcagct gttatccagg cgctggatgg ggaaatgcgc aacgcagtgt
241 gcatatttta tctggttctc cgagctctgg acacactgga agatgacatg accatcagtg
301 tggaaaagaa ggtcccgctg ttacacaact ttcactcttt cctttaccaa ccagactggc
361 ggttcatgga gagcaaggag aaggatcgcc aggtgctgga ggacttccca acgatctccc
421 ttgagtttag aaatctggct gagaaatacc aaacagtgat tgccgacatt tgccggagaa
481 tgggcattgg gatggcagag tttttggata agcatgtgac ctctgaacag gagtgggaca
541 agtactgcca ctatgttgct gggctggtcg gaattggcct ttcccgtctt ttctcagcct
601 cagagtttga agacccctta gttggtgaag atacagaacg tgccaactct atgggcctgt
661 ttctgcagaa aacaaacatc atccgtgact atctggaaga ccagcaagga ggaagagagt
721 tctggcctca agaggtttgg agcaggtatg ttaagaagtt aggggatttt gctaagccgg
781 agaatattga cttggccgtg cagtgcctga atgaacttat aaccaatgca ctgcaccaca
841 tcccagatgt catcacctac ctttcgagac tcagaaacca gagtgtgttt aacttctgtg
901 ctattccaca ggtgatggcc attgccactt tggctgcctg ttataataac cagcaggtgt
961 tcaaaggggc agtgaagatt cggaaagggc aagcagtgac cctgatgatg gatgccacca
1021 atatgccagc tgtcaaagcc atcatatatc agtatatgga agagatttat catagaatcc
1081 ccgactcaga cccatcttct agcaaaacaa ggcagatcat ctccaccatc cggacgcaga
1141 atcttcccaa ctgtcagctg atttcccgaa gccactactc ccccatctac ctgtcgtttg
1201 tcatgctttt ggctgccctg agctggcagt acctgaccac tctctcccag gtaacagaag
1261 actatgttca gactggagaa cactgatccc aaatttgtcc atagctgaag tccaccataa
1321 agtggattta ctttttttct ttaaggatgg atgttgtgtt ctctttattt ttttcctact
1381 actttaatcc ctaaaagaac gctgtgtggc tgggaccttt aggaaagtga aatgcaggtg
1441 agaagaacct aaacatgaaa ggaaagggtg cctcatccca gcaacctgtc cttgtgggtg
1501 atgatcactg tgctgcttgc ggctcatggc agagcattca gtgccacggt ttaggtgaag
1561 tcgctgcata tgtgtctgtc atgagatcct acttagtatg atcctggcta gaatgataat
1621 taaaagtatt taattttgaa aaaaaaaaaa aaaaaaaaaa aaaa
//