LOCUS BC029378 1584 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens telomeric repeat binding factor (NIMA-interacting) 1,
mRNA (cDNA clone MGC:32568 IMAGE:4724068), complete cds.
ACCESSION BC029378
VERSION BC029378.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1584)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1584)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 41 Row: m Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 9257244.
FEATURES Location/Qualifiers
source 1..1584
/db_xref="H-InvDB:HIT000040737"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:32568 IMAGE:4724068"
/tissue_type="Liver"
/clone_lib="NIH_MGC_76"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1584
/gene="TERF1"
/gene_synonym="hTRF1-AS"
/gene_synonym="PIN2"
/gene_synonym="t-TRF1"
/gene_synonym="TRF"
/gene_synonym="TRF1"
/db_xref="GeneID:7013"
/db_xref="HGNC:HGNC:11728"
/db_xref="MIM:600951"
CDS 9..1268
/gene="TERF1"
/gene_synonym="hTRF1-AS"
/gene_synonym="PIN2"
/gene_synonym="t-TRF1"
/gene_synonym="TRF"
/gene_synonym="TRF1"
/codon_start=1
/product="telomeric repeat binding factor
(NIMA-interacting) 1"
/protein_id="AAH29378.1"
/db_xref="GeneID:7013"
/db_xref="HGNC:HGNC:11728"
/db_xref="MIM:600951"
/translation="MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQEL
LECQVQVGAPEEEEEEEEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTR
NSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGS
IEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII
SQKDTFHSFFQHFSYNHMMEKIKSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQD
KPSGNDVEMETEANLDTRKRSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKES
RRATESRIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKF
NNRTSVMLKDRWRTMKKLKLISSDSED"
BASE COUNT 555 a 287 c 359 g 383 t
ORIGIN
1 attttaacat ggcggaggat gtttcctcag cggccccgag cccgcggggc tgtgcggatg
61 gtagggatgc cgaccctact gaggagcaga tggcagaaac agagagaaac gacgaggagc
121 agttcgaatg ccaggaactg ctcgagtgcc aggtgcaggt gggggccccc gaggaggagg
181 aggaggagga ggaggacgcg ggcctggtgg ccgaggccga ggccgtggct gccggctgga
241 tgctcgattt cctctgcctc tctctttgcc gagctttccg cgacggccgc tccgaggact
301 tccgcaggac ccgcaacagc gcagaggcta ttattcatgg actatccagt ctaacagctt
361 gccagttgag aacgatatac atatgtcagt ttttgacaag aattgcagca ggaaaaaccc
421 ttgatgcaca gtttgaaaat gatgaacgaa ttacaccctt ggaatcagcc ctgatgattt
481 ggggttcaat tgaaaaggaa catgacaaac ttcatgaaga aatacagaat ttaattaaaa
541 ttcaggctat agctgtttgt atggaaaatg gcaactttaa agaagcagaa gaagtctttg
601 aaagaatatt tggtgatcca aattctcata tgcctttcaa aagcaaattg cttatgataa
661 tctctcagaa agatacattt cattcctttt ttcaacactt cagctacaac cacatgatgg
721 agaaaattaa gagttatgtg aattatgtgc taagtgaaaa atcatcaacc tttctaatga
781 aggcagcggc aaaagtagta gaaagcaaaa ggacaagaac aataacttct caagataaac
841 ctagtggtaa tgatgttgaa atggaaactg aagctaattt ggatacaaga aaaaggtctc
901 acaagaatct tttcttatct aagttgcaac atggaaccca gcaacaagac cttaataaga
961 aagaaagaag agtaggaact cctcaaagta caaaaaagaa aaaagaaagc agaagagcca
1021 ctgaaagcag aatacctgtt tcaaagagtc agccggtaac tcctgaaaaa catcgagcta
1081 gaaaaagaca ggcatggctt tgggaagaag acaagaattt gagatctggc gtgaggaaat
1141 atggagaggg aaactggtct aaaatactgt tgcattataa attcaacaac cggacaagtg
1201 tcatgttaaa agacagatgg aggaccatga agaaactaaa actgatttcc tcagacagcg
1261 aagactgatt gtgtttgtaa aagcttgatg aaaggacagt taagtatttt gatcactgca
1321 ttttgtttga aacttgtgtc attgatgtaa tttaaaactt ttgtttaaag cattacagta
1381 tttttctgtg accatcaatt aatgagggtt tgtgctacca gagttaaagc atatgctatc
1441 attgtattct ttaagaacct tattttgata aaatgtaaat ttgttgaacc ctgccacatt
1501 tagtatcccc acccccaaat cctgttccaa tgaaaaaatt aaaacctgat acgcaaaaaa
1561 aaaaaaaaaa aaaaaaaaaa aaaa
//