LOCUS BC028705 1877 bp mRNA linear HUM 12-JAN-2007
DEFINITION Homo sapiens sphingomyelin synthase 2, mRNA (cDNA clone MGC:26963
IMAGE:4823252), complete cds.
ACCESSION BC028705
VERSION BC028705.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1877)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1877)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: f Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37059795.
FEATURES Location/Qualifiers
source 1..1877
/db_xref="H-InvDB:HIT000040614"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26963 IMAGE:4823252"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1877
/gene="MGC26963"
/gene_synonym="SMS2"
/db_xref="GeneID:166929"
CDS 365..1462
/gene="MGC26963"
/gene_synonym="SMS2"
/codon_start=1
/product="MGC26963 protein"
/protein_id="AAH28705.1"
/db_xref="GeneID:166929"
/translation="MDIIETAKLEEHLENQPSDPTNTYARPAEPVEEENKNGNGKPKS
LSSGLRKGTKKYPDYIQIAMPTESRNKFPLEWWKTGIAFIYAVFNLVLTTVMITVVHE
RVPPKELSPPLPDKFFDYIDRVKWAFSVSEINGIILVGLWITQWLFLRYKSIVGRRFC
FIIGTLYLYRCITMYVTTLPVPGMHFQCAPKLNGDSQAKVQRILRLISGGGLSITGSH
ILCGDFLFSGHTVTLTLTYLFIKEYSPRHFWWYHLICWLLSAAGIICILVAHEHYTID
VIIAYYITTRLFWWYHSMANEKNLKVSSQTNFLSRAWWFPIFYFFEKNVQGSIPCCFS
WPLSWPPGCFKSSCKKYSRVQKIGEDNEKST"
BASE COUNT 577 a 371 c 384 g 545 t
ORIGIN
1 gtcgagagcg gaaatggagt ttcaaaatca caagcttctt tcccacatga acataagact
61 aggagcacat atggaagagt aaagttgaag ggaatttgga tgatgatttg gcaagatgct
121 gtgggatagt aacatctttt tgagggaaga attggcttcc tttcttgaaa gtggtgaagg
181 tacagcatat agctgcatgg aagaaacagt aatcggatgg ctaccttcta cattttgtat
241 taggaaacaa agtccattgt aagagtccat gttgatcttg gaaatagaag gattgaaaaa
301 agctaaattt ccacaaagaa caagaacttg accatctcct ttttgatctg aagactaggg
361 gacaatggat atcatagaga cagcaaaact tgaagaacat ttggaaaatc aacccagtga
421 tcctacgaac acttatgcaa gacccgctga acctgttgaa gaagaaaaca aaaatggcaa
481 tggtaaaccc aagagcttat ccagtgggct gcgaaaaggc accaaaaagt acccggacta
541 tatccaaatt gctatgccca ctgaatcaag gaacaaattt ccactagagt ggtggaaaac
601 gggcattgcc ttcatatatg cagttttcaa cctcgtcttg acaaccgtca tgatcacagt
661 tgtacatgag agggtccctc ccaaggagct tagccctcca ctcccagaca agttttttga
721 ttacattgat agggtgaaat gggcattttc tgtatcagaa ataaatggga ttatattagt
781 tggattatgg atcacccagt ggctgtttct gagatacaag tcaatagtgg gacgcagatt
841 ctgttttatt attggaactt tatacctgta tcgctgcatt acaatgtatg ttactactct
901 acctgtgcct ggaatgcatt tccagtgtgc tccaaagctc aatggagact ctcaggcaaa
961 agttcaacgg attctacgat tgatttctgg tggtggattg tccataactg gatcacatat
1021 cttatgtgga gacttcctct tcagcggtca cacggttacg ctgacactga cttatttgtt
1081 catcaaagaa tattcgcctc gtcacttctg gtggtatcat ttaatctgct ggctgctgag
1141 tgctgccggg atcatctgca ttcttgtagc acacgaacac tacactatcg atgtgatcat
1201 tgcttattat atcacaacac gactgttttg gtggtaccat tcaatggcca atgaaaagaa
1261 cttgaaggtc tcttcacaga ctaatttctt atctcgagca tggtggttcc ccatctttta
1321 tttttttgag aaaaatgtac aaggctcaat tccttgctgc ttctcctggc cgctgtcttg
1381 gcctcctggc tgcttcaaat catcatgcaa aaagtattca cgggttcaga agattggtga
1441 agacaatgag aaatcgacct gaggagcaaa acaaaggcat cagctcttac accaaaagag
1501 ttaacgctgt aaccaaaggt atagttttgt tttttatttt aggagaactg actggtaaat
1561 gaagaaatgg accaaatttt gtgtaaacga ttagaaagat gaacaaagta ttgccctttg
1621 actggttttc ttcttcatcc tgagaaagat acattctctt gcagctcttc attcattggt
1681 gacaagcccc caccccggga ctttactaat gagcttgtta aagaggtgcc aaagaacata
1741 ttcctccttt ctttattctt tctccaccaa aaccctctac ttcagaattt tttcaggata
1801 tttttcagcc caaggtcaga agaatgtgtt aatattttaa ataaaatatc tggacatcta
1861 caaaaaaaaa aaaaaaa
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