LOCUS BC028630 2162 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens lipoma HMGIC fusion partner-like 5, mRNA (cDNA clone
MGC:33835 IMAGE:5262164), complete cds.
ACCESSION BC028630
VERSION BC028630.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2162)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2162)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC028630.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: g Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222377.
FEATURES Location/Qualifiers
source 1..2162
/db_xref="H-InvDB:HIT000040596"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33835 IMAGE:5262164"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2162
/gene="LHFPL5"
/gene_synonym="dJ510O8.8"
/gene_synonym="MGC33835"
/gene_synonym="TMHS"
/db_xref="GeneID:222662"
/db_xref="HGNC:HGNC:21253"
/db_xref="MIM:609427"
CDS 378..1037
/gene="LHFPL5"
/gene_synonym="dJ510O8.8"
/gene_synonym="MGC33835"
/gene_synonym="TMHS"
/codon_start=1
/product="lipoma HMGIC fusion partner-like 5"
/protein_id="AAH28630.1"
/db_xref="GeneID:222662"
/db_xref="HGNC:HGNC:21253"
/db_xref="MIM:609427"
/translation="MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALF
IQPYWIGDSVNTPQAGYFGLFSYCVGNVLSSELICKGGPLDFSSIPSRAFKTAMFFVA
LGMFLIIGSIICFSLFFICNTATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRM
CGEQTGKYTLGHCTIRWAFMLAILSIGDALILSFLAFVLGYRQDKLLPDDYKADGTEE
V"
BASE COUNT 523 a 596 c 524 g 519 t
ORIGIN
1 gggggctggc cgcggtgctg aaacggcgcc ctccgcggac ggaggagggg gcggggctct
61 cgggagccgt gagccgggaa gagggagacg ggcagggcgg cgccagcagg ccgtggtggg
121 cttgggagga ggcaggagac tggagacagc ctcggctaga gcggacacag gcacctggca
181 agctttcctt gaccaaatca aggttgtcct tgtcctatta agcctcttcc ccttgccttg
241 aagggacctc acctggtgcc ctgacgtcag cctactcccc aaaccccgct ggggagtgac
301 ctgcttctag gcctgcatcc acaaagctac ggacttgcag cccacgggac cccagcccag
361 ggcctgctgc cctcaccatg gtgaaattgc tgccggccca ggaggcagcc aagatctacc
421 ataccaacta tgtgcggaac tcgcgagccg tgggcgtgat gtggggtacc ctcaccatct
481 gcttctccgt actggtcatg gccctcttca tccagcccta ctggatcggc gacagcgtca
541 acacaccgca ggcaggctac ttcggccttt tctcctactg cgtgggtaac gtgctgtcct
601 ccgagctcat ctgcaagggc ggccccctag acttctcctc catcccctct agagccttca
661 agactgccat gttctttgtg gccttgggca tgttcctcat cattggctcc atcatctgct
721 tcagcctgtt cttcatctgc aacacggcca cagtctataa gatctgtgca tggatgcagc
781 tggctgcggc cacaggccta atgattggct gcctggtcta ccctgatggt tgggactcaa
841 gtgaggtgcg gcgcatgtgt ggggagcaga cgggcaagta cacgctgggc cactgcacca
901 tccgctgggc cttcatgctg gccatcctca gcattggcga cgccctcatc ctctccttcc
961 tggccttcgt gttgggctac cggcaggaca agctcctccc tgacgactac aaggcagatg
1021 gaacagagga ggtgtgaagc agctgaaggg tcggtcatct atttcccaga cacaggaaaa
1081 ctagggaatc aaattcttca gagataagaa cttgttcttc caagtttcct tgttcctggc
1141 tactataggc ctgaagcctg aagcctttta ttataacact aaaactggac agtctcctga
1201 gacaagacct cctactgtac tctttctggg gaagcagaac tgcagtgacc cacttcaaag
1261 atattcagag gctgagcggt gcagggagtg ctcagttgct ggggatggga tccaagtcca
1321 tttcttagtt ccacacagca gcaaatcgct tcaccttctt gaagcctctc ctctgtaaag
1381 cgagagggct aaatgggtcc atctctaggg gccttccctc ccaggtctgt gtctgatagc
1441 atacacacac acatatatat acacacacac acacacacac acacacacac acacatacat
1501 acacacacac atatatatac acacacacac acacacacac acacactctc tctctctctc
1561 tcaaacacac acaaatgccc aaccagctct aagagggcac tgaagaggtg gctggacatg
1621 tgctgggtca tttttagggt gaggtgtagg gggtcttttg cttctccctt ctcatatttt
1681 gttttcttat tgctgctcag aggggggtaa ggaatggagg ggccatcaga acttgaatcc
1741 tttaacatcc accaggaagt tttatgaaga gtgggtgata ggatctaaaa tctctgcaga
1801 cttttttcct cccgggagcc aaatatcaca tttccttatg gtgcccacac tgactcaacc
1861 agaactggct accagcttca gaaatgtgtt acttatgttc aagtaatttg ttataggaat
1921 agatgacatt tttttttttc aaaaactttg gatttggcat atagtcatct atagggggat
1981 tggttccagg atcccctgca gatgccaaaa tacatggatg cccaagtcct cagctaaaaa
2041 tagcgtagta tttgcatata acctatgcac atcctcctgt atactttaaa tcatctctag
2101 attacttata atacctaata caatgtaaat gctatgtaaa tactcaaaaa aaaaaaaaaa
2161 aa
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