LOCUS BC028360 3055 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens RIO kinase 3 (yeast), mRNA (cDNA clone MGC:26362
IMAGE:4828351), complete cds.
ACCESSION BC028360
VERSION BC028360.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3055)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3055)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 34 Row: d Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22325376
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..3055
/db_xref="H-InvDB:HIT000091577"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26362 IMAGE:4828351"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3055
/gene="RIOK3"
/db_xref="GeneID:8780"
/db_xref="HGNC:HGNC:11451"
/db_xref="MIM:603579"
CDS 154..1428
/gene="RIOK3"
/codon_start=1
/product="RIOK3 protein"
/protein_id="AAH28360.1"
/db_xref="GeneID:8780"
/db_xref="HGNC:HGNC:11451"
/db_xref="MIM:603579"
/translation="MDLVGVASPEPGTAAAWGPSKCPWAIPQNTISCSLADVMSEQLA
KELQLEEEAAVFPEVAVAEGPFITGENIDTSSDLMLAQMLQMEYDREYDAQLRREKKK
FNGDSKVSISFENYRKVHPYEDSDSSEDEVDWQDTRDDPYRPAKPVPTPKKGFIGKGK
DITTKHDEVVCGRKNTARMENFAPEFQVGDGIGMDLKLSNHVFNALKQHAYSEERRSA
RLHEKKEHSTAEKAVDPKTRLLMYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDE
KEDSKVIPTECAIKVFKTTLNEFKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMH
NLARMQRAGIPCPTVVLLKKHILVMSFIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHL
MRQLYHECTLVHADLSEYNMLWHAGKVRSTFC"
BASE COUNT 964 a 572 c 676 g 843 t
ORIGIN
1 agcggcggac gcggccgccg ccgtcgccgc catctgtcac ctccactccg gcatcagcag
61 ccagtcgccc gtgtcccgcc tgtctcctcg gcggagcctg ctgcccgtcc tgccacctct
121 ctgctctgtt cttgtctctg ccttcattcc cgaatggatc tggtaggagt ggcatcgcct
181 gagcccggga cggcagcggc ctggggaccc agcaagtgtc catgggctat tcctcaaaat
241 acaatatctt gttctttggc tgatgtaatg agtgaacagc tggccaaaga attgcagtta
301 gaagaagaag ctgccgtttt tcctgaagtt gctgttgctg aaggaccatt tattactgga
361 gaaaacattg atacttccag tgaccttatg ctggctcaga tgctacagat ggaatatgac
421 agagaatatg atgcacagct taggcgtgaa aaaaaaaaat tcaatggaga tagcaaagtt
481 tccatttcct ttgaaaatta tcgaaaagtg catccttatg aagacagcga tagctctgaa
541 gatgaggttg actggcagga tactcgtgat gatccctaca gaccagcaaa accggttccc
601 actcctaaaa agggctttat tggaaaagga aaagatatca ccaccaaaca tgatgaagta
661 gtatgtggga gaaagaacac agcaagaatg gaaaattttg cacctgagtt tcaggtagga
721 gatggaattg gaatggattt aaaactatca aaccatgttt tcaatgcttt aaaacaacat
781 gcctactcag aagaacgtcg aagtgcccgc ctacatgaga aaaaggagca ttctacagca
841 gaaaaagcag ttgatcctaa gacacgttta cttatgtata aaatggtcaa ctctggaatg
901 ttggagacaa tcactggctg tattagtaca ggaaaggagt ctgttgtctt tcatgcatat
961 ggagggagca tggaggatga aaaggaagat agtaaagtta tacctacaga atgtgccatc
1021 aaggtattta aaacaaccct taatgaattt aagaatcgtg acaaatatat taaagatgat
1081 ttcaggttta aagatcgctt cagtaaacta aatccacgta agatcatccg catgtgggca
1141 gaaaaagaaa tgcacaatct cgcaagaatg cagagagctg gaattccttg tccaacagtt
1201 gtactactga agaaacacat tttagttatg tcttttattg gccatgatca agttccagcc
1261 cctaaattaa aagaagtaaa gctcaatagt gaagaaatga aagaagccta ctatcaaact
1321 cttcatttga tgcggcagtt atatcatgaa tgtacgcttg tccatgctga cctcagtgag
1381 tataacatgc tgtggcatgc tggaaaggtg aggagcacat tttgttaaca ttcagattta
1441 attactgtaa gtaaaattta aaatgtaaat acatcagttc atgttctgta ttgaaatagg
1501 tctggttgat cgatgtcagt cagtcagtag aacctaccca ccctcacggc ctggagttct
1561 tgttccggga ctgcaggaat gtctcgcagt ttttccagaa aggaggagtc aaggaagccc
1621 ttagtgaacg agaactcttc aatgctgttt caggcttaaa catcacagca gataatgaag
1681 ctgatttttt agctgagata gaagctttgg agaaaatgaa tgaagatcac gttcagaaga
1741 atggaaggaa agctgcttca tttttgaaag atgatggaga cccaccacta ctatatgatg
1801 aatagcacta atacccactg cttcagtgtt aacacagcag tgattgtcag ctgccaatag
1861 caaatgaagt tatgggtgac ttgaaatacc aaaacctgag gagtgggcaa tggtgcttct
1921 gtgcttttcc cccttgtaac ccatgtgcca gatgtgtgga atttttagct cagcattgag
1981 agaataaaat gtcactacct ctcatcttat gaacaggata atataattct ttaacagcta
2041 taggttatct ggctgaagta gacctaattt tatgtgactt gtggtgtaaa atgtcttgat
2101 gataattttt aaaacttggg taacacttcc aaatatggga ggaaaggaca gatgtgttta
2161 caagggagga ttttacaaca tacttgcttt attcacctcc ctgttttgtg ttgcgtcttt
2221 ccttgaatat tttattggcc cagagttagc ctttctcaat tatgtttcca gactgtggcc
2281 gtgattctaa aggaaaatgt gtgctcttta gtgggtagaa caaatggaaa tttggtttca
2341 gaatggctga cagaaatcga cataagtcat gtaatttttg ttgatatatc atgaaaatga
2401 acagaattct ttttccatac ttatatctaa gaaaaggcat cataggtttc tgaaagagat
2461 aactatataa cagcttttta actatccagt caactttcag cttttctaca tttaggtaaa
2521 atggttagga tataactcat ggtgtggcta atctacattt atcaataaaa tgtaaattat
2581 ctgaaaggac agaatataag atttaaccat gtttgacgta ttttaattta gttaatgaag
2641 caaaattcag tttatatttc actagaactg tgtacttgat tgattttcag agaaatatca
2701 caaattagaa atattaaatc taaggatgaa aggtatatat aaaacaattt gggggccagg
2761 cacgatggct caaacctgta atcccagcac tttgggagac caaggcgggt ggatcacttg
2821 aggtcaggag ttcaagacca gcctgggcaa catggcgaaa ccctgtctct actaaaaata
2881 caaaaattag ccgggtgtgg tggcacttct ctgtaatctc agcttctcag gaggctgaga
2941 caggagaatc gcttgaaccc gggaggcaga ggttgcagtg agctgagatc atgccactgc
3001 actccggcct aggtgacaga gggaaactcc atctccagga aaaaaaaaaa aaaaa
//