LOCUS BC028315 1885 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens GABA(A) receptor-associated protein like 1, mRNA (cDNA
clone MGC:35365 IMAGE:5183078), complete cds.
ACCESSION BC028315
VERSION BC028315.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1885)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1885)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: d Column: 10.
FEATURES Location/Qualifiers
source 1..1885
/db_xref="H-InvDB:HIT000040522"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:35365 IMAGE:5183078"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1885
/gene="GABARAPL1"
/gene_synonym="APG8L"
/gene_synonym="ATG8"
/gene_synonym="GEC1"
/db_xref="GeneID:23710"
/db_xref="HGNC:HGNC:4068"
/db_xref="MIM:607420"
CDS 241..594
/gene="GABARAPL1"
/gene_synonym="APG8L"
/gene_synonym="ATG8"
/gene_synonym="GEC1"
/codon_start=1
/product="GABA(A) receptor-associated protein like 1"
/protein_id="AAH28315.1"
/db_xref="GeneID:23710"
/db_xref="HGNC:HGNC:4068"
/db_xref="MIM:607420"
/translation="MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDL
DKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEED
YFLYVAYSDESVYGK"
BASE COUNT 482 a 427 c 488 g 488 t
ORIGIN
1 cagctctagc gaaaagccgc cggtatttct ccatctggct ctcctctacc tccaggcagg
61 ctcacccgag atccccgccc cgaacccccc ctgcacactc ggcccagcgc tgttgccccc
121 ggagcggacg tttctgcagc tattctgagc acaccttgac gtcggctgag ggagcgggac
181 agggtcagcg gcgaaggagg caggccccgc gcggggatct cggaagccct gcggtgcatc
241 atgaagttcc agtacaagga ggaccatccc tttgagtatc ggaaaaagga aggagaaaag
301 atccggaaga aatatccgga cagggtcccc gtgattgtag agaaggctcc aaaagccagg
361 gtgcctgatc tggacaagag gaagtaccta gtgccctctg accttactgt tggccagttc
421 tacttcttaa tccggaagag aatccacctg agacctgagg acgccttatt cttctttgtc
481 aacaacacca tccctcccac cagtgctacc atgggccaac tgtatgagga caatcatgag
541 gaagactatt ttctgtatgt ggcctacagt gatgagagtg tctatgggaa atgagtggtt
601 ggaagcccag cagatgggag cacctggact tgggggtagg ggaggggtgt gtgtgcgcga
661 catggggaaa gagggtggct cccaccgcaa ggagacagaa ggtgaagaca tctagaaaca
721 ttacaccaca cacaccgtca tcacattttc acatgctcaa ttgatatttt ttgctgcttc
781 ctcggcccag ggagaaagca tgtcaggaca gagctgttgg attggctttg atagaggaat
841 ggggatgatg taagtttaca gtattcctgg ggtttaattg ttgtgcagtt tcatagatgg
901 gtcaggaggt ggacaagttg gggccagaga tgatggcagt ccagcagcaa ctccctgtgc
961 tcccttctct ttgggcagag attctatttt tgacatttgc acaagacagg tagggaaagg
1021 ggacttgtgg tagtggacca tacctgggga ccaaaagaga cccactgtaa ttgatgcatt
1081 gtggcccctg atcttccctg tctcacactt cttttctccc atcccggttg caatctcact
1141 cagacatcac agtaccaccc caggggtggc agtagacaac aacccagaaa tttagacagg
1201 gatctcttac ctttggaaaa taggggttag gcatgaaggt ggttgtgatt aagaagatgg
1261 ttttgttatt aaatagcatt aaactggaat tgacaagagt gttgagcatc cctgtctaac
1321 ctgctctttc tctttggtgc cccttatctc accccttcct tggaatttaa taagtctcag
1381 gcatttccaa ttgtagacta aaaccactct tagcatctcc tctagtattt tccatgtatc
1441 aggacagagg tgtcttatgt agggaggggg caagtatgaa gtaaggtaat tatatactac
1501 tctcattcag gattcttgct cccatgctgc tgtcccttca ggctcacatg cacaggaatg
1561 ctacatgatg gccagctgct tccctccttg gttatcatcc actgcagctg ctagttagaa
1621 aggtttggag ggatgacttt tagtaaatca tggggatttt attgatttat tttcactttt
1681 gggattttgt ggggtgggag tggggagcag gaattgcact cagacatgac atttcaattc
1741 atctctgcta atgaaaaggg ttctttctct tgggggaaat gtgtgtgtca gttctgtcag
1801 ctgcaagttc ttgtataatg aagtcaatgc catcaggcca aggaaataaa ataattgctt
1861 accttaaaaa aaaaaaaaaa aaaaa
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