LOCUS BC028148 1676 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tumor necrosis factor (TNF superfamily, member 2),
mRNA (cDNA clone MGC:39905 IMAGE:5217636), complete cds.
ACCESSION BC028148
VERSION BC028148.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1676)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1676)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: j Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 25952110.
FEATURES Location/Qualifiers
source 1..1676
/db_xref="H-InvDB:HIT000040462_10"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39905 IMAGE:5217636"
/tissue_type="Blood, adult leukocytes"
/clone_lib="NIH_MGC_118"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1676
/gene="TNF"
/gene_synonym="DIF"
/gene_synonym="TNF-alpha"
/gene_synonym="TNFSF2"
/db_xref="GeneID:7124"
/db_xref="HGNC:HGNC:11892"
/db_xref="MIM:191160"
CDS 158..859
/gene="TNF"
/gene_synonym="DIF"
/gene_synonym="TNF-alpha"
/gene_synonym="TNFSF2"
/codon_start=1
/product="tumor necrosis factor (TNF superfamily, member
2)"
/protein_id="AAH28148.1"
/db_xref="GeneID:7124"
/db_xref="HGNC:HGNC:11892"
/db_xref="MIM:191160"
/translation="MSTESMIRDVELAEEALPKKTGGPQGSRRCLFLSLFSFLIVAGA
TTLFCLLHFGVIGPQREEFPRDLSLISPLAQAVRSSSRTPSDKPVAHVVANPQAEGQL
QWLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIA
VSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYL
DFAESGQVYFGIIAL"
BASE COUNT 399 a 496 c 402 g 379 t
ORIGIN
1 ggacagcaga ggaccagcta agagggagag aagcaactac agaccccccc tgaaaacaac
61 cctcagacgc cacatcccct gacaagctgc caggcaggtt ctcttcctct cacatactga
121 cccacggctc caccctctct cccctggaaa ggacaccatg agcactgaaa gcatgatccg
181 ggacgtggag ctggccgagg aggcgctccc caagaagaca ggggggcccc agggctccag
241 gcggtgcttg ttcctcagcc tcttctcctt cctgatcgtg gcaggcgcca ccacgctctt
301 ctgcctgctg cactttggag tgatcggccc ccagagggaa gagttcccca gggacctctc
361 tctaatcagc cctctggccc aggcagtcag atcatcttct cgaaccccga gtgacaagcc
421 tgtagcccat gttgtagcaa accctcaagc tgaggggcag ctccagtggc tgaaccgccg
481 ggccaatgcc ctcctggcca atggcgtgga gctgagagat aaccagctgg tggtgccatc
541 agagggcctg tacctcatct actcccaggt cctcttcaag ggccaaggct gcccctccac
601 ccatgtgctc ctcacccaca ccatcagccg catcgccgtc tcctaccaga ccaaggtcaa
661 cctcctctct gccatcaaga gcccctgcca gagggagacc ccagaggggg ctgaggccaa
721 gccctggtat gagcccatct atctgggagg ggtcttccag ctggagaagg gtgaccgact
781 cagcgctgag atcaatcggc ccgactatct cgactttgcc gagtctgggc aggtctactt
841 tgggatcatt gccctgtgag gaggacgaac atccaacctt cccaaacgcc tcccctgccc
901 caatcccttt attaccccct ccttcagaca ccctcaacct cttctggctc aaaaagagaa
961 ttgggggctt agggtcggaa cccaagctta gaactttaag caacaagacc accacttcga
1021 aacctgggat tcaggaatgt gtggcctgca cagtgaagtg ctggcaacca ctaagaattc
1081 aaactggggc ctccagaact cactggggcc tacagctttg atccctgaca tctggaatct
1141 ggagaccagg gagcctttgg ttctggccag aatgctgcag gacttgagaa gacctcacct
1201 agaaattgac acaagtggac cttaggcctt cctctctcca gatgtttcca gacttccttg
1261 agacacggag cccagccctc cccatggagc cagctccctc tatttatgtt tgcacttgtg
1321 attatttatt atttatttat tatttattta tttacagatg aatgtattta tttgggagac
1381 cggggtatcc tgggggaccc aatgtaggag ctgccttggc tcagacatgt tttccgtgaa
1441 aacggagctg aacaataggc tgttcccatg tagccccctg gcctctgtgc cttcttttga
1501 ttatgttttt taaaatattt atctgattaa gttgtctaaa caatgctgat ttggtgacca
1561 actgtcactc attgctgagc ctctgctccc caggggagtt gtgtctgtaa tcgccctact
1621 attcagtggc gagaaataaa gtttgcttag aaaaaaaaaa aaaaaaaaaa aaaaaa
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