LOCUS BC028139 3439 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ATPase, Ca++ transporting, type 2C, member 1, mRNA
(cDNA clone MGC:39950 IMAGE:5215224), complete cds.
ACCESSION BC028139
VERSION BC028139.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3439)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3439)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: h Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48762690.
FEATURES Location/Qualifiers
source 1..3439
/db_xref="H-InvDB:HIT000040459"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39950 IMAGE:5215224"
/tissue_type="Blood, adult leukocytes"
/clone_lib="NIH_MGC_118"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3439
/gene="ATP2C1"
/gene_synonym="ATP2C1A"
/gene_synonym="HHD"
/gene_synonym="hSPCA1"
/gene_synonym="KIAA1347"
/gene_synonym="PMR1"
/gene_synonym="SPCA1"
/db_xref="GeneID:27032"
/db_xref="HGNC:HGNC:13211"
/db_xref="MIM:604384"
CDS 193..2859
/gene="ATP2C1"
/gene_synonym="ATP2C1A"
/gene_synonym="HHD"
/gene_synonym="hSPCA1"
/gene_synonym="KIAA1347"
/gene_synonym="PMR1"
/gene_synonym="SPCA1"
/codon_start=1
/product="ATPase, Ca++ transporting, type 2C, member 1"
/protein_id="AAH28139.1"
/db_xref="GeneID:27032"
/db_xref="HGNC:HGNC:13211"
/db_xref="MIM:604384"
/translation="MKVARFQKIPNGENETMIPVLTSKKASELPVSEVASILQADLQN
GLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFKNPLIMLLLASAVISVLMHQFDD
AVSITVAILIVVTVAFVQEYRSEKSLEELSKLVPPECHCVREGKLEHTLARDLVPGDT
VCLSVGDRVPADLRLFEAVDLSIDESSLTGETTPCSKVTAPQPAATNGDLASRSNIAF
MGTLVRCGKAKGVVIGTGENSEFGEVFKMMQAEEAPKTPLQKSMDLLGKQLSFYSFGI
IGIIMLVGWLLGKDILEMFTISVSLAVAAIPEGLPIVVTVTLALGVMRMVKKRAIVKK
LPIVETLGCCNVICSDKTGTLTKNEMTVTHIFTSDGLHAEVTGVGYNQFGEVIVDGDV
VHGFYNPAVSRIVEAGCVCNDAVIRNNTLMGKPTEGALIALAMKMGLDGLQQDYIRKA
EYPFSSEQKWMAVKCVHRTQQDRPEICFMKGAYEQVIKYCTTYQSKGQTLTLTQQQRD
VYQQEKARMGSAGLRVLALASGPELGQLTFLGLVGIIDPPRTGVKEAVTTLIASGVSI
KMITGDSQETAVAIASRLGLYSKTSQSVSGEEIDAMDVQQLSQIVPKVAVFYRASPRH
KMKIIKSLQKNGSVVAMTGDGVNDAVALKAADIGVAMGQTGTDVCKEAADMILVDDDF
QTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINII
MDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSSIIIVCGTLFVFWREL
RDNVITPRDTTMTFTCFVFFDMFNALSSRSQTKSVFEIGLCSNRMFCYAVLGSIMGQL
LVIYFPPLQKVFQTESLSILGLALGEEWTAAG"
BASE COUNT 1043 a 648 c 777 g 971 t
ORIGIN
1 ccggggcttt ggatgctgct gctaggggtg gtgggagcag ccgtgggacg cgtggccggg
61 agcgggggtg acagcctggg attccggggg cttctcttcc ttgtcctcct cctctcctct
121 ctattcccag tgtggccgtg gctgacacta aagactttgt agccatcaac ccgagtgcag
181 tttcgatgga aaatgaaggt tgcacgtttt caaaaaatac ctaatggtga aaatgagaca
241 atgattcctg tattgacatc aaaaaaagca agtgaattac cagtcagtga agttgcaagc
301 attctccaag ctgatcttca gaatggtcta aacaaatgtg aagttagtca taggcgagcc
361 tttcatggct ggaatgagtt tgatattagt gaagatgagc cactgtggaa gaagtatatt
421 tctcagttta aaaatcccct tattatgctg cttctggctt ctgcagtcat cagtgtttta
481 atgcatcagt ttgatgatgc cgtcagtatc actgtggcaa tacttatcgt tgttacagtt
541 gcctttgttc aggaatatcg ttcagaaaaa tctcttgaag aattgagtaa acttgtgcca
601 ccagaatgcc attgtgtgcg tgaaggaaaa ttggagcata cacttgcccg agacttggtt
661 ccaggtgata cagtttgcct ttctgttggg gatagagttc ctgctgactt acgcttgttt
721 gaggctgtgg atctttccat tgatgagtcc agcttgacag gtgagacaac gccttgttct
781 aaggtgacag ctcctcagcc agctgcaact aatggagatc ttgcatcgag aagtaacatt
841 gcctttatgg gaacactggt cagatgtggc aaagcaaagg gtgttgtcat tggaacagga
901 gaaaattctg aatttgggga ggtttttaaa atgatgcaag cagaagaggc accaaaaacc
961 cctctgcaga agagcatgga cctcttagga aaacaacttt ccttttactc ctttggtata
1021 ataggaatca tcatgttggt tggctggtta ctgggaaaag atatcctgga aatgtttact
1081 attagtgtaa gtttggctgt agcagcaatt cctgaaggtc tccccattgt ggtcacagtg
1141 acgctagctc ttggtgttat gagaatggtg aagaaaaggg ccattgtgaa aaagctgcct
1201 attgttgaaa ctctgggctg ctgtaatgtg atttgttcag ataaaactgg aacactgacg
1261 aagaatgaaa tgactgttac tcacatattt acttcagatg gtctgcatgc tgaggttact
1321 ggagttggct ataatcaatt tggggaagtg attgttgatg gtgatgttgt tcatggattc
1381 tataacccag ctgttagcag aattgttgag gcgggctgtg tgtgcaatga tgctgtaatt
1441 agaaacaata ctctaatggg gaagccaaca gaaggggcct taattgctct tgcaatgaag
1501 atgggtcttg atggacttca acaagactac atcagaaaag ctgaataccc ttttagctct
1561 gagcaaaagt ggatggctgt taagtgtgta caccgaacac agcaggacag accagagatt
1621 tgttttatga aaggtgctta cgaacaagta attaagtact gtactacata ccagagcaaa
1681 gggcagacct tgacacttac tcagcagcag agagatgtgt accaacaaga gaaggcacgc
1741 atgggctcag cgggactcag agttcttgct ttggcttctg gtcctgaact gggacagctg
1801 acatttcttg gcttggtggg aatcattgat ccacctagaa ctggtgtgaa agaagctgtt
1861 acaacactca ttgcctcagg agtatcaata aaaatgatta ctggagattc acaggagact
1921 gcagttgcaa tcgccagtcg tctgggattg tattccaaaa cttcccagtc agtctcagga
1981 gaagaaatag atgcaatgga tgttcagcag ctttcacaaa tagtaccaaa ggttgcagta
2041 ttttacagag ctagcccaag gcacaagatg aaaattatta agtcgctaca gaagaacggt
2101 tcagttgtag ccatgacagg agatggagta aatgatgcag ttgctctgaa ggctgcagac
2161 attggagttg cgatgggcca gactggtaca gatgtttgca aagaggcagc agacatgatc
2221 ctagtggatg atgattttca aaccataatg tctgcaatcg aagagggtaa agggatttat
2281 aataacatta aaaatttcgt tagattccag ctgagcacga gtatagcagc attaacttta
2341 atctcattgg ctacattaat gaactttcct aatcctctca atgccatgca gattttgtgg
2401 atcaatatta ttatggatgg acccccagct cagagccttg gagtagaacc agtggataaa
2461 gatgtcattc gtaaacctcc tcgcaactgg aaagacagca ttttgactaa aaacttgata
2521 cttaaaatac ttgtttcatc aataatcatt gtttgtggga ctttgtttgt cttctggcgt
2581 gagctacgag acaatgtgat tacacctcga gacacaacaa tgaccttcac atgctttgtg
2641 ttttttgaca tgttcaatgc actaagttcc agatcccaga ccaagtctgt gtttgagatt
2701 ggactctgca gtaatagaat gttttgctat gcagttcttg gatccatcat gggacaatta
2761 ctagttattt actttcctcc gcttcagaag gtttttcaga ctgagagcct aagcatactg
2821 ggtctggctc tgggagagga gtggacagca gctggttgag atacatcccc atctggagac
2881 aggactgcca ctgacagaag atgtgagctg tgtctaagtc cagtcttgtg cccagccgtg
2941 tctgcgcctt cactctttgg aactctgcat acaacatctt agcaccatct tcctgcagct
3001 cttccttacc taaataaaga aacagcccaa gggcagtatt tctaaaagca ctgtaacagc
3061 ttttcatttt ctccacatat actacaaatt ctataaagaa agaaattaat ttaaaaaaac
3121 taagatgttt ttctcttctg gcttcataaa tgccttgctg tataaattga aatattgata
3181 ctgaactgtc tttttaatga tgacctaact ttattcaacc catcggaatt tactttttcc
3241 ctgaaataag atcttttcca ctggtctact acctgaccat aaacatgtct gcatttgaat
3301 tctctaaacc ctaaatctgt gtctatgaaa aatacaaatg actattaaat attaaaaaaa
3361 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3421 aaaaaaaaaa aaaaaaaaa
//