LOCUS BC027911 2453 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens jumonji domain containing 5, mRNA (cDNA clone
MGC:34163 IMAGE:5207043), complete cds.
ACCESSION BC027911
VERSION BC027911.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2453)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2453)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: h Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13376122.
FEATURES Location/Qualifiers
source 1..2453
/db_xref="H-InvDB:HIT000040348"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34163 IMAGE:5207043"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2453
/gene="JMJD5"
/gene_synonym="FLJ13798"
/db_xref="GeneID:79831"
/db_xref="HGNC:HGNC:25840"
CDS 162..1412
/gene="JMJD5"
/gene_synonym="FLJ13798"
/codon_start=1
/product="jumonji domain containing 5"
/protein_id="AAH27911.1"
/db_xref="GeneID:79831"
/db_xref="HGNC:HGNC:25840"
/translation="MAGDTHCPAEPLAREGTLWEALRALLPHSKEDLKLDLGEKVERS
VVTLLQRATELFYEGRRDECLQSSEVILDYSWEKLNTGTWQDVDKDWRRVYAIGCLLK
ALCLCQAPEDANTVAAALRVCDMGLLMGAAILGDILLKVAAILQTHLPGKRPARGSLP
EQPCTKKARADHGLIPDVKLEKTVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCM
QKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQH
QLFDQIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVMG
RKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEIL
FIPVKYWHYVRALDLSFSVSFWWS"
BASE COUNT 594 a 687 c 707 g 465 t
ORIGIN
1 cgagcggtga gcgatcgata ctcctatgct agcctctggc tcctcagggg acacagccga
61 gtggtcggac caaacgcaac gagtcttcgc cagcccaaag gcgactcgac accgtcccag
121 ctgaagagag gcacgggact gaaccagctg gtggtggccc gatggctgga gacacccact
181 gccccgcaga gcccctggcc agagaaggca ctttatggga ggccctcagg gcgctcctgc
241 cgcacagtaa agaagacctg aagttggacc tcggggagaa agtggagagg agcgtggtga
301 cattgttgca gcgagccact gagctcttct acgagggcag gagggacgag tgtctgcaga
361 gcagcgaggt gatcctggac tactcctggg agaagctcaa cacgggcaca tggcaggacg
421 tagacaaaga ctggcgccgg gtctacgcca tcggctgcct cctgaaagcc ctgtgtctgt
481 gccaggcacc tgaggatgcc aacactgtgg ccgcagccct gcgggtctgt gacatgggcc
541 tgctgatggg ggcagccatc ctgggggaca tccttcttaa agtcgctgcc atcctccaga
601 cacacctccc tggaaagagg cctgcccgtg gctccctccc agagcaaccc tgcacaaaga
661 aagcaagggc ggaccatggt ttgattccag atgtgaagtt agaaaaaaca gtcccccggc
721 tgcaccgtcc gtccctccag catttcaggg agcagttttt ggttccaggg aggcccgtga
781 tcctgaaagg cgtggctgac cactggccgt gcatgcagaa gtggagtttg gagtatatcc
841 aggagatcgc tggctgccga actgtcccag tggaagttgg ttcgaggtac acagatgagg
901 aatggtccca gaccctcatg acggtcaacg agttcatcag caaatacatc gtgaatgagc
961 caagggacgt cgggtacctt gctcagcacc agctctttga ccagatcccg gagttgaagc
1021 aggacatcag catccccgac tactgcagcc tgggcgatgg ggaggaggag gaaatcacca
1081 tcaatgcctg gtttggtccc cagggaacca tctccccact acatcaggat ccccagcaaa
1141 acttcctagt gcaggtgatg gggaggaagt acatccggct gtattccccg caggagtcag
1201 gggctctgta ccctcatgac acgcaccttc tccataacac gagccaggtt gacgtggaga
1261 atcccgacct ggaaaagttc cccaagtttg ccaaggcccc attcctgtcc tgcatcctgt
1321 ctcctggaga gatcctgttc atcccggtga aatactggca ttacgtgcgg gctctggatt
1381 tgagcttctc ggtcagcttc tggtggtcgt agccaggata ggagctgaaa gggcctgaca
1441 tgcagacagc attcatctgt tcactaattt cctgggtcct ggaatctata gagacaagca
1501 ggactgaacc tgtgtcctga agagccttca ctgcccagtg gcagccctgg ggggctgagc
1561 tccagcactg gacaggcaca gagcaggggc tgcccaggaa ggagcacact ccaggccagg
1621 ggtgcatggc agaggaaggt ggggagagcc cagaaggaca ttgcagacag acagcctgca
1681 tggggactct ggcatcagaa agccgaatgt ttttgggaaa cgggtgggtc acacaggcag
1741 gggtgaaaca tgggctctga ggttggctac ctgattcaaa cccggccgcg ctgcgcacct
1801 gctgggtgac ttggccagga tcccccactt cgctgtgccc atatggaaaa gagggcaagg
1861 ccagtcctca ctgccgaggg ccgagaaggc ggtgccgagc ccctgctgct gcatgaacct
1921 tagccgctgt cactgatccc aattactctg atccttttgc ccttccttcc cataacggcc
1981 tgctggacgc cacagcctga atactggaga gagctgggca ttgcccaggt cacaggagag
2041 agtccgtaga gacctgcgca ggagccggga cccctgctga gcagtgggag ctttctgtca
2101 tccccatggc tcaaggataa cctacctgcc tgcagagaag agcgaaggtc ttgctggatg
2161 acttttcacc cgcactcacc caggagcagg ctcccaagtg aagaaaccac caaaccatca
2221 ccagctccta gaagcctccc tcccaccacc ttctagtcac catcccccag aagtaatgac
2281 tctcaaacct gggggatttg aggccagggg gagagccagg ctctatgctt tctgtaattg
2341 tgtctcgttt gtgtgcacgc aggtttgttt tatgttttgg ccattaagat tttccccagc
2401 caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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