LOCUS BC027858 1858 bp mRNA linear HUM 15-FEB-2005
DEFINITION Homo sapiens C-type lectin domain family 10, member A, mRNA (cDNA
clone MGC:34439 IMAGE:5225381), complete cds.
ACCESSION BC027858
VERSION BC027858.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1858)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1858)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: m Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5453683.
FEATURES Location/Qualifiers
source 1..1858
/db_xref="H-InvDB:HIT000258996"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34439 IMAGE:5225381"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1858
/gene="CLEC10A"
/gene_synonym="CLECSF13"
/gene_synonym="CLECSF14"
/gene_synonym="HML"
/gene_synonym="HML2"
/db_xref="GeneID:10462"
/db_xref="MIM:605999"
CDS 251..1021
/gene="CLEC10A"
/gene_synonym="CLECSF13"
/gene_synonym="CLECSF14"
/gene_synonym="HML"
/gene_synonym="HML2"
/codon_start=1
/product="CLEC10A protein"
/protein_id="AAH27858.1"
/db_xref="GeneID:10462"
/db_xref="MIM:605999"
/translation="MTRTYENFQYLENKVKVQGFKNGPLPLQSLLQRLRSGPCHLLLS
LGLGLLLLVIICVVGFQNSKFQRDLVTLRTDFSNFTSNTVAEIQALTSQGSSLEETIA
SLKAEVEGFRQERQAVHSEMLLRVQQLVQDLKKLTCQVATLNNNASTEGTCCPVNWVE
HQDSCYWFSHSGMSWAEAEKYCQLKNAHLVVINSREEQVRASGTQFLRHVPFREMVLK
LGRTLESSGSFQNDCHLCHTLRDLIGLSIQRNISKLLS"
BASE COUNT 501 a 488 c 458 g 411 t
ORIGIN
1 gagatgggat gtcccagatg atagggctcc tgggatttca gacccaagac cagcaggact
61 ccagtcacct ctaccccagc tctccaggac acagcgctcc caactctgag tgacgtccca
121 cctctggtcc ttgcagcaca accaacgtgg gaatcacacc ctccagacct cccacagctc
181 caccccagac tgggcgccgg ccctgcctcc atttcagctg tgacaacctc agagccgtgt
241 tggcccaagc atgacaagga cgtatgaaaa cttccagtac ttggagaata aggtgaaagt
301 ccaggggttt aaaaatgggc cacttcctct ccagtccctc ctgcagcgtc tccgctctgg
361 gccctgccat ctcctgctgt ccctgggcct cggcctgctg ctgctggtca tcatctgtgt
421 ggttggattc caaaattcca aatttcagag ggacctggtg accctgagaa cagattttag
481 caacttcacc tcaaacactg tggcggagat ccaggcactg acttcccagg gcagcagctt
541 ggaagaaacg atagcatctc tgaaagctga ggtggagggt ttcaggcagg aacggcaggc
601 agttcattct gaaatgctcc tgcgagtcca gcagctggtg caagacctga agaaactgac
661 ctgccaggtg gctactctca acaacaatgc ctccactgaa gggacctgct gccccgtcaa
721 ctgggtggag caccaagaca gctgctactg gttctctcac tctgggatgt cctgggccga
781 ggctgagaag tactgccagc tgaagaacgc ccacctggtg gtcatcaact ccagggagga
841 gcaggtgagg gcttctggta ctcagttcct aagacatgtc ccatttaggg aaatggttct
901 taagcttggc cgcacattgg aatcatctgg gagcttccag aatgactgtc atctgtgcca
961 caccctcaga gatttaatag gcctgagcat ccagagaaac atctccaaac tcctcagttg
1021 atttaacgaa gagctaaagt tgagaatcac tagtttaagg agttggctgg gatgggaaga
1081 agtcaccact gcccttctgt caccgcagaa ttttgtccag aaatatctag gctccgcata
1141 cacctggatg ggcctcagtg accctgaagg agcctggaag tgggtggatg gaacagacta
1201 tgcgaccggc ttccagtgag tgcaccctgg ctttctgtgc caatgtcctc cgtcagcgtt
1261 tcccccaggg atctgactgg cagcctctcc tcccctgaac tgaattctac tccatctacc
1321 cttcctagct tgctgttgtc ttttcctctc aggaactgga agccaggcca gccagacgac
1381 tggcaggggc acgggctggg tggaggcgag gactgtgctc acttccatcc agacggcagg
1441 tggaatgacg acgtctgcca gaggccctac cactgggtct gcgaggctgg cctgggtcag
1501 accagccagg agagtcactg agctgccttt ggtgggacca cccggccaca gaaatggcgg
1561 tgggaggagg actcttctca cgacctcctc gcaagaccgc tctgggagag aaataagcac
1621 tgggagattg gaagcactgc taacattttg aatttttttc tctttaattt taaaaagatg
1681 gtatagtgtt cttaagcttt tatttttttt ccaacttttg aaagtcaact tcatgaaggt
1741 ataattttta cataataaaa atgcactcat ttaaagagta aaaaaaaaaa aaaaaaaaaa
1801 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
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