LOCUS BC026865 1727 bp mRNA linear HUM 06-JUL-2005
DEFINITION Homo sapiens kalirin, RhoGEF kinase, mRNA (cDNA clone
IMAGE:4469692), partial cds.
ACCESSION BC026865
VERSION BC026865.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1727)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1727)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: c Column: 7.
FEATURES Location/Qualifiers
source 1..1727
/db_xref="H-InvDB:HIT000091296"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4469692"
/tissue_type="Kidney, hypernephroma"
/clone_lib="NIH_MGC_89"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1727
/gene="KALRN"
/gene_synonym="DUET"
/gene_synonym="duo"
/gene_synonym="TRAD"
/db_xref="GeneID:8997"
/db_xref="MIM:604605"
CDS <1..883
/gene="KALRN"
/gene_synonym="DUET"
/gene_synonym="duo"
/gene_synonym="TRAD"
/codon_start=2
/product="KALRN protein"
/protein_id="AAH26865.1"
/db_xref="GeneID:8997"
/db_xref="MIM:604605"
/translation="MNLGRLQGFEGTLTAQGKLLQQDTFYVIELDAGMQSRTKERRVF
LFEQIVIFSELLRKGSLTPGYMFKRSIKMNYLVLEENVDNDPCKFALMNRETSERVVL
QAANADIQQAWVQDINQVLETQRDFLNALQSPIEYQRKERSTAVMRSQPARLPQASPR
PYSSVPAGSEKPPKGSSYNPPLPPLKISTSNGSPGFEYHQPGDKFEASKNDLGGCNGT
SSMAVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSIL
APLTKATAAESSDGSIK"
BASE COUNT 493 a 406 c 390 g 438 t
ORIGIN
1 gatgaatcta ggacgtctgc agggctttga gggcactctg actgctcagg ggaagctgct
61 gcagcaggac acattctatg tgatcgagct ggatgcaggc atgcagtccc ggaccaaaga
121 gaggcgcgtg ttcctcttcg agcagattgt catcttcagt gaactgctca ggaagggatc
181 cctcacccct ggctacatgt tcaaaaggag catcaagatg aattacttgg tcctggagga
241 gaatgtggac aatgatccct gcaagtttgc actcatgaac agagagactt ctgagagggt
301 tgttctgcaa gccgccaacg ctgacatcca gcaggcctgg gtgcaggaca tcaatcaagt
361 cttagaaaca cagcgagact ttttgaatgc actgcaatcg cccattgagt atcaacggaa
421 agaaaggagc acagctgtga tgaggtctca acctgccagg cttccccaag ccagccccag
481 gccctactcc tctgttcctg cgggctcaga gaagccccca aagggctcca gctataaccc
541 acctctgcct cccctgaaga tatctacctc caatggcagt ccagggtttg aataccacca
601 gcctggggac aagttcgaag ccagcaagaa cgacctggga ggctgcaatg ggacctcgtc
661 catggccgtg atcaaagatt actatgcact gaaggagaat gaaatctgtg tgagccaagg
721 tgaggtggtc caggtcctcg ccgtcaacca gcagaacatg tgtctggtgt accagcctgc
781 cagcgaccat tcccccgccg ccgagggctg ggtcccaggc agcatcctgg cgcccctcac
841 caaagccaca gcagcagaaa gtagtgacgg gagcatcaag taagtgcctc gttggcttcc
901 ccgggagagg agtatgagga ttaaaaatat tcagaaacaa acaaaagaac acaaaaatgc
961 aaacacatgg tagggaatta ctactgctta ttctcaacag taccacagaa ccagtgtttg
1021 agtgctgaca ccatatgcaa catggggcat ccgggctgga gtgatccagt tttttagttg
1081 gtggtggcga tgatttttct ttccttttgg tttataattt tctgttcatt tttccccctt
1141 tctcccccac attcattaag aaccctactg aaaccctagg tgacaaaagg tgtgccttct
1201 gttgccacat ttgacccacc acaggactca ctggactgga cttctattta tattgtatta
1261 agtaactgat atatatatat atatatattt ttgattgaca ccaaaaaatt accttggcac
1321 aaatgccaga cctgtgaagg tcagaggccc gctgcttttc ccaggaggga gggaactttt
1381 tggttgtctg tggcaattcc tctgtacaga ttgtaacttt ttaaaaattt cccttcaccc
1441 cgtcacttga atatatgttc atagtaattt gtaagatact tcttttcctt attttggttg
1501 caagaccctt ccgaacacat tcctgtataa agtattttgc actatttaaa gaaacccata
1561 tggatgaagt caggatgtgc aatatgatgg cgtcacagtg ctcatcgttg tacctgtaat
1621 gtaactaatc agtttaaatg tactatttta aatatgtaaa ataaattttc accatgagca
1681 tgtttttatg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
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