LOCUS BC026274 2531 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens retinol dehydrogenase 11 (all-trans/9-cis/11-cis),
mRNA (cDNA clone MGC:23798 IMAGE:4250934), complete cds.
ACCESSION BC026274
VERSION BC026274.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2531)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2531)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 35 Row: e Column: 15.
FEATURES Location/Qualifiers
source 1..2531
/db_xref="H-InvDB:HIT000040174"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23798 IMAGE:4250934"
/tissue_type="Prostate"
/clone_lib="NIH_MGC_83"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2531
/gene="RDH11"
/gene_synonym="ARSDR1"
/gene_synonym="CGI-82"
/gene_synonym="FLJ32633"
/gene_synonym="HCBP12"
/gene_synonym="MDT1"
/gene_synonym="PSDR1"
/gene_synonym="RALR1"
/gene_synonym="SCALD"
/db_xref="GeneID:51109"
/db_xref="HGNC:HGNC:17964"
/db_xref="MIM:607849"
CDS 28..984
/gene="RDH11"
/gene_synonym="ARSDR1"
/gene_synonym="CGI-82"
/gene_synonym="FLJ32633"
/gene_synonym="HCBP12"
/gene_synonym="MDT1"
/gene_synonym="PSDR1"
/gene_synonym="RALR1"
/gene_synonym="SCALD"
/codon_start=1
/product="retinol dehydrogenase 11
(all-trans/9-cis/11-cis)"
/protein_id="AAH26274.1"
/db_xref="GeneID:51109"
/db_xref="HGNC:HGNC:17964"
/db_xref="MIM:607849"
/translation="MVELMFPLLLLLLPFLLYMAAPQIRKMLSSGVCTSTVQLPGKVV
VVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLS
DTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLL
LEKLKESAPSRIVNVSSLAHHLGRIHFHNLQGEKFYNAGLAYCHSKLANILFTQELAR
RLKGSGVTTYSVHPGTVQSELVRHSSFMRWMWWLFSFFIKTPQQGAQTSLHCALTEGL
EILSGNHFSDCHVAWVSAQARNETIARRLWDVSCDLLGLSID"
BASE COUNT 799 a 508 c 545 g 679 t
ORIGIN
1 gctctggtgc cgctgcagcc ggcagagatg gttgagctca tgttcccgct gttgctcctc
61 cttctgccct tccttctgta tatggctgcg ccccaaatca ggaaaatgct gtccagtggg
121 gtgtgtacat caactgttca gcttcctggg aaagtagttg tggtcacagg agctaataca
181 ggtatcggga aggagacagc caaagagctg gctcagagag gagctcgagt atatttagct
241 tgccgggatg tggaaaaggg ggaattggtg gccaaagaga tccagaccac gacagggaac
301 cagcaggtgt tggtgcggaa actggacctg tctgatacta agtctattcg agcttttgct
361 aagggcttct tagctgagga aaagcacctc cacgttttga tcaacaatgc aggagtgatg
421 atgtgtccgt actcgaagac agcagatggc tttgagatgc acataggagt caaccacttg
481 ggtcacttcc tcctaaccca tctgctgcta gagaaactaa aggaatcagc cccatcaagg
541 atagtaaatg tgtcttccct cgcacatcac ctgggaagga tccacttcca taacctgcag
601 ggcgagaaat tctacaatgc aggcctggcc tactgtcaca gcaagctagc caacatcctc
661 ttcacccagg aactggcccg gagactaaaa ggctctggcg ttacgacgta ttctgtacac
721 cctggcacag tccaatctga actggttcgg cactcatctt tcatgagatg gatgtggtgg
781 cttttctcct ttttcatcaa gactcctcag cagggagccc agaccagcct gcactgtgcc
841 ttaacagaag gtcttgagat tctaagtggg aatcatttca gtgactgtca tgtggcatgg
901 gtctctgccc aagctcgtaa tgagactata gcaaggcggc tgtgggacgt cagttgtgac
961 ctgctgggcc tctcaataga ctaacaggca gtgccagttg gacccaagag aagactgcag
1021 cagactacac agtacttctt gtcaaaatga ttctccttca aggttttcaa aacctttagc
1081 acaaagagag caaaaccttc cagccttgcc tgcttggtgt ccagttaaaa ctcagtgtac
1141 tgccagattc gtctaaatgt ctgtcatgtc cagatttact ttgcttctgt tactgccaga
1201 gttactagag atatcataat aggataagaa gaccctcata tgacctgcac agctcatttt
1261 ccttctgaaa gaaactacta cctaggagaa tctaagctat agcagggatg atttatgcaa
1321 atttgaacta gcttctttgt tcacaattca gttcctccca accaaccagt cttcacttca
1381 agagggccac actgcaacct cagcttaaca tgaataacaa agactggctc aggagcaggg
1441 cttgcccagg catggtggat caccggaggt cagtagttca agaccagcct ggccaacatg
1501 gtgaaacccc acctctacta aaaattgtgt atatctttgt gtgtcttcct gtttatgtgt
1561 gccaagggag tattttcaca aagttcaaaa cagccacaat aatcagagat ggagcaaacc
1621 agtgccatcc agtctttatg caaatgaaat gctgcaaagg gaagcagatt ctgtatatgt
1681 tggtaactac ccaccaagag cacatgggta gcagggaaga agtaaaaaaa gagaaggaga
1741 atactggaag atatgcacaa aatgaaggga ctagttaagg attaactagc cctttaagga
1801 ttaactagtt aaggattaat agcaaaagat attaaatatg ctaacatagc tgtggaggaa
1861 ttgagggcaa gcacccagga ctgatgaggt cttaacaaaa accagtgtgg caaaaaaaaa
1921 aaaaaaaaaa aaaaaaaaaa atcctaaaaa caaacaaaca aaaaaaacaa ttcttcattc
1981 agaaaaatta tcttagggac tgatattggt aattatggtc aatttaataa tattttgggg
2041 catttcctta cattgtcttg acaagattaa aatgtctgtg ccaaaatttt gtattttatt
2101 tggagacttc ttatcaaaag taatgctgcc aaaggaagtc taaggaatta gtagtgttcc
2161 catcacttgt ttggagtgtg ctattctaaa agattttgat ttcctggaat gacaattata
2221 ttttaacttt ggtgggggaa agagttatag gaccacagtc ttcacttctg atacttgtaa
2281 attaatcttt tattgcactt gttttgacca ttaagctata tgtttagaaa tggtcatttt
2341 acggaaaaat tagaaaaatt ctgataatag tgcagaataa atgaattaat gttttactta
2401 atttatattg aactgtcaat gacaaataaa aattcttttt gattattttt tgttttcatt
2461 taccagaata aaaactaaga attaaaagtt tgattacagt caaaaaaaaa aaaaaaaaaa
2521 aaaaaaaaaa a
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