LOCUS BC026262 2161 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens lymphotoxin beta receptor (TNFR superfamily, member
3), mRNA (cDNA clone MGC:22593 IMAGE:4703362), complete cds.
ACCESSION BC026262
VERSION BC026262.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2161)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2161)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: b Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4505038.
FEATURES Location/Qualifiers
source 1..2161
/db_xref="H-InvDB:HIT000040166"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22593 IMAGE:4703362"
/tissue_type="Lung"
/clone_lib="NIH_MGC_77"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2161
/gene="LTBR"
/gene_synonym="CD18"
/gene_synonym="LT-BETA-R"
/gene_synonym="TNF-R-III"
/gene_synonym="TNFCR"
/gene_synonym="TNFR-RP"
/gene_synonym="TNFR2-RP"
/gene_synonym="TNFRSF3"
/db_xref="GeneID:4055"
/db_xref="HGNC:HGNC:6718"
/db_xref="MIM:600979"
CDS 199..1506
/gene="LTBR"
/gene_synonym="CD18"
/gene_synonym="LT-BETA-R"
/gene_synonym="TNF-R-III"
/gene_synonym="TNFCR"
/gene_synonym="TNFR-RP"
/gene_synonym="TNFR2-RP"
/gene_synonym="TNFRSF3"
/codon_start=1
/product="lymphotoxin beta receptor (TNFR superfamily,
member 3)"
/protein_id="AAH26262.1"
/db_xref="GeneID:4055"
/db_xref="HGNC:HGNC:6718"
/db_xref="MIM:600979"
/translation="MLLPWATSAPGLAWGPLVLGLFGLLAASQPQAVPPYASENQTCR
DQEKEYYEPQHRICCSRCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCR
PCDPVMGLEEIAPCTSKRKTQCRCQPGMFCAAWALECTHCELLSDCPPGTEAELKDEV
GKGNNHCVPCKAGHFQNTSSPSARCQPHTRCENQGLVEAAPGTAQSDTTCKNPLEPLP
PEMSGTMLMLAVLLPLAFFLLLATVFSCIWKSHPSLCRKLGSLLKRRPQGEGPNPVAG
SWEPPKAHPYFPDLVQPLLPISGDVSPVSTGLPAAPVLEAGVPQQQSPLDLTREPQLE
PGEQSQVAHGTNGIHVTGGSMTITGNIYIYNGPVLGGPPGPGDLPATPEPPYPIPEEG
DPGPPGLSTPHQEDGKAWHLAETEHCGATPSNRGPRNQFITHD"
BASE COUNT 473 a 708 c 606 g 374 t
ORIGIN
1 gactcccact tcctgagctc cgccatggga gccctggagg cccggcctgg ccgctcccgg
61 ccctggggtg cacatcggcc ctgagtcccg tcccaggctc tgggctcggg cagccgccgc
121 caccgctgcc caggacgtcg ggcctcctgc cttcctccca ggcccccacg ttgctggccg
181 cctggccgag tggccgccat gctcctgcct tgggccacct ctgcccccgg cctggcctgg
241 gggcctctgg tgctgggcct cttcgggctc ctggcagcat cgcagcccca ggcggtgcct
301 ccatatgcgt cggagaacca gacctgcagg gaccaggaaa aggaatacta tgagccccag
361 caccgcatct gctgctcccg ctgcccgcca ggcacctatg tctcagctaa atgtagccgc
421 atccgggaca cagtttgtgc cacatgtgcc gagaattcct acaacgagca ctggaactac
481 ctgaccatct gccagctgtg ccgcccctgt gacccagtga tgggcctcga ggagattgcc
541 ccctgcacaa gcaaacggaa gacccagtgc cgctgccagc cgggaatgtt ctgtgctgcc
601 tgggccctcg agtgtacaca ctgcgagcta ctttctgact gcccgcctgg cactgaagcc
661 gagctcaaag atgaagttgg gaagggtaac aaccactgcg tcccctgcaa ggccgggcac
721 ttccagaata cctcctcccc cagcgcccgc tgccagcccc acaccaggtg tgagaaccaa
781 ggtctggtgg aggcagctcc aggcactgcc cagtccgaca caacctgcaa aaatccatta
841 gagccactgc ccccagagat gtcaggaacc atgctgatgc tggccgttct gctgccactg
901 gccttctttc tgctccttgc caccgtcttc tcctgcatct ggaagagcca cccttctctc
961 tgcaggaaac tgggatcgct gctcaagagg cgtccgcagg gagagggacc caatcctgta
1021 gctggaagct gggagcctcc gaaggcccat ccatacttcc ctgacttggt acagccactg
1081 ctacccattt ctggagatgt ttccccagta tccactgggc tccccgcagc cccagttttg
1141 gaggcagggg tgccgcaaca gcagagtcct ctggacctga ccagggagcc gcagttggaa
1201 cccggggagc agagccaggt ggcccacggt accaatggca ttcatgtcac cggcgggtct
1261 atgactatca ctggcaacat ctacatctac aatggaccag tactgggggg accaccgggt
1321 cctggagacc tcccagctac ccccgaacct ccatacccca ttcccgaaga gggggaccct
1381 ggccctcccg ggctctctac accccaccag gaagatggca aggcttggca cctagcggag
1441 acagagcact gtggtgccac accctctaac aggggcccaa ggaaccaatt tatcacccat
1501 gactgactga gtctgagaaa aggcagaaga aggggggcac aagggcacct tctcccttga
1561 ggctgccctg cccacgtggg attcacaggg gcctgagtag ggcccgggga agcagagccc
1621 taagggatta aggctcagac acctctgaga gcaggtgggc actggctggg tacggtgccc
1681 tccacaggac tctccctact gcctgagcaa acctgaggcc tcccggcaga cccacccacc
1741 ccctggggct gctcagcctc aggcacggac agggcacatg ataccaactg ctgcccacta
1801 cggcacgccg caccggagca cggcaccgag ggagccgcca cacggtcacc tgcaaggacg
1861 tcacgggccc ctctaaagga ttcgtggtgc tcatccccaa gcttcagaga ccctttgggg
1921 ttccacactt cacgtggact gaggtagacc ctgcatgaag atgaaattat agggaggacg
1981 ctccttccct cccctcctag aggagaggaa agggagtcat taacaactag ggggttgggt
2041 aggattccta ggtatgggga agagttttgg aaggggagga aaatggcaag tgtatttata
2101 ttgtaaccac atgcaaataa aaagaatggg acaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2161 a
//