LOCUS BC026257 1722 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens apolipoprotein F, mRNA (cDNA clone MGC:22520
IMAGE:4710467), complete cds.
ACCESSION BC026257
VERSION BC026257.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1722)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1722)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: c Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50659075.
FEATURES Location/Qualifiers
source 1..1722
/db_xref="H-InvDB:HIT000040164"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22520 IMAGE:4710467"
/tissue_type="Liver"
/clone_lib="NIH_MGC_76"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1722
/gene="APOF"
/gene_synonym="Apo-F"
/gene_synonym="MGC22520"
/db_xref="GeneID:319"
/db_xref="HGNC:HGNC:615"
/db_xref="MIM:107760"
CDS 55..1035
/gene="APOF"
/gene_synonym="Apo-F"
/gene_synonym="MGC22520"
/codon_start=1
/product="apolipoprotein F"
/protein_id="AAH26257.1"
/db_xref="GeneID:319"
/db_xref="HGNC:HGNC:615"
/db_xref="MIM:107760"
/translation="MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTN
VLMHFPLSLESQTPSSDPLSCQFLHPKSLPGFSHMAPLPKFLVSLALRNALEEAGCQA
DVWALQLQLYRQGGVNATQVLIQHLRGLQKGRSTERNVSVEALASALQLLAREQQSTG
RVGRSLPTEDCENEKEQAVHNVVQLLPGVGTFYNLGTALYYATQNCLGKARERGRDGA
IDLGYDLLMTMAGMSGGPMGLAISAALKPALRSGVQQLIQYYQDQKDANISQPETTKE
GLRAISDVSDLEETTTLASFISEVVSSAPYWGWAIIKSYDLDPGAGSLEI"
BASE COUNT 490 a 396 c 435 g 401 t
ORIGIN
1 aggcagaaca ggatcaggaa gcgatcaaac ctaccaaggc agtctcactt ctcaatgact
61 ggactgtgtg ggtactctgc tccagacatg cgtggcctca gactcatcat gataccagtt
121 gagctgctac tttgctacct cctgctgcac cctgtggatg ccacttcata tggaaagcag
181 acaaatgtct tgatgcactt tcccttgtcc ttggaatccc agacaccctc ctcagacccc
241 ttgtcctgcc aatttctgca cccaaagtca ctgcctggtt tcagccacat ggcccctcta
301 cccaagttct tggtaagcct ggctctaagg aatgccctgg aggaagctgg ttgtcaggct
361 gatgtttggg ctctacagct acagctctac cgccagggtg gtgtgaatgc tacacaggtc
421 ctcatccagc atcttcgagg gctccagaaa ggcagaagca cagagaggaa cgtgtcagtg
481 gaagccctgg cctctgctct gcagctgtta gccagggagc agcaaagcac aggaagggtc
541 gggcgctccc tcccgacaga ggactgtgag aatgagaagg agcaagctgt gcacaatgta
601 gtccagctgc tgccaggagt gggaaccttc tacaacctgg gcacagcttt gtattatgct
661 actcaaaact gcctgggcaa ggccagggaa cgaggccgag atggggccat agatctggga
721 tatgaccttc tgatgaccat ggctgggatg tcaggggggc ctatgggtct agcgatcagt
781 gctgcactta aacctgcatt aaggtctggg gttcagcagt tgatccagta ttaccaagat
841 cagaaagacg caaacatctc tcagccggag accaccaagg agggtttgag ggccatctca
901 gatgtgagtg acttggaaga aacaactact ctggcttctt tcatatcaga agtagtaagt
961 tcagctccct actgggggtg ggccataatc aagagctatg acttagatcc tggggctggg
1021 agtcttgaga tataaaagaa tgtggtaacc acagaattaa taactgtact accctgacaa
1081 gctatataca tgtcttcaaa attttaatct gatttatcca ggaggaaggc tgtacagtaa
1141 aacgtaagaa cgtaaatgtt tgggtgttga agtcacaggg tttggtttcg aatctaggct
1201 ccacttgtta gagcctcggt gatcactgaa tagtaacttc tttcttgaac taagatcagt
1261 tttgaagttt ctaaaggaga tagaatgatt ttaacctcaa tgagttgccc tgtaaattta
1321 aaatgataca atgaatctaa aatgcttatc acagtacttt caataaatag ctattagcca
1381 ggtgcggtgg ctcacgcctg taatcccagc actgtgagag gctgaggcgg gatgatcacc
1441 tgaggtcagg agttcaagat cagcctgggc aacatggcga aaccccgtct ctacaataaa
1501 tacaaaaaat tatcctggcg gagttatgca cgcttgtagt cccaactacc tgggaggctg
1561 aggcgggaga atcacctgag cctgggaggt cgaggctgca gcgagccgag atcgcgccgc
1621 tgcattccag cctgggtgac agagcgagac catgtctcaa aaaaaataaa aataaaaaaa
1681 aattgttttc acaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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