LOCUS BC026217 2918 bp mRNA linear HUM 21-JUL-2008
DEFINITION Homo sapiens ataxia, cerebellar, Cayman type, mRNA (cDNA clone
MGC:21400 IMAGE:4153341), complete cds.
ACCESSION BC026217
VERSION BC026217.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2918)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2918)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 20 Row: b Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 61835122.
FEATURES Location/Qualifiers
source 1..2918
/db_xref="H-InvDB:HIT000040147"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21400 IMAGE:4153341"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2918
/gene="ATCAY"
/gene_synonym="BNIP-H"
/gene_synonym="CLAC"
/db_xref="GeneID:85300"
/db_xref="HGNC:HGNC:779"
/db_xref="MIM:608179"
CDS 373..1488
/gene="ATCAY"
/gene_synonym="BNIP-H"
/gene_synonym="CLAC"
/codon_start=1
/product="ataxia, cerebellar, Cayman type"
/protein_id="AAH26217.1"
/db_xref="GeneID:85300"
/db_xref="HGNC:HGNC:779"
/db_xref="MIM:608179"
/translation="MGTTEATLRMENVDVKEEWQDEDLPRPLPEETGVELLGSPVEDT
SSPPNTLNFNGAHRKRKTLVAPEINISLDQSEGSLLSDDFLDTPDDLDINVDDIETPD
ETDSLEFLGNGNELEWEDDTPVATAKNMPGDSADLFGDGTTEDGSAANGRLWRTVIIG
EQEHRIDLHMIRPYMKVVTHGGYYGEGLNAIIVFAACFLPDSSLPDYHYIMENLFLYV
ISSLELLVAEDYMIVYLNGATPRRRMPGIGWLKKCYQMIDRRLRKNLKSLIIVHPSWF
IRTVLAISRPFISVKFINKIQYVHSLEDLEQLIPMEHVQIPDCVLQYEEERLKARRES
ARPQPEFVLPRSEEKPEVAPVENRSALVSEDQETSMS"
BASE COUNT 699 a 868 c 797 g 554 t
ORIGIN
1 gccgagcctc tgccagccct gagctgggaa gaagcagcta cctcggaggc agggcgcgca
61 ggcgggcggc gatgagaggg ggcgcagccg cagccccgcg ctggggagcc caccgctaac
121 cctgcacccc acccacccct gcacaaaaga gctggcgggc gctggccacg tcgccctggg
181 tgaccttcct cggatgcaga atccgcccct gcgagcatcc tcttcctcct aggctctgaa
241 ggcccgggga gcgtgagcga tgcccagctg cacccgggca gggctcgcct ttgtttgcca
301 gtaaggagga gaggctgtct cagctgcaga ggggtcatcc ctgcttcaag ccagtgcctc
361 ttcccagctc ccatggggac caccgaagcc acgctccgga tggaaaacgt ggacgtgaag
421 gaggaatggc aggacgaaga tcttcccagg ccactcccag aagagacggg ggtggaactg
481 cttggcagcc cggtggaaga cacatcctct cctcccaaca cgctaaattt caacggagcg
541 catcgtaaga ggaagacgct ggtggcccca gagatcaaca tttctctgga tcagagtgag
601 gggtccctgc tgtccgatga cttcttggat acccctgatg acctggatat taacgtggat
661 gacatcgaga cccccgatga gaccgactcg ctggagttcc tggggaatgg caacgaactg
721 gagtgggaag acgacacccc cgtggccacc gccaagaaca tgcccgggga cagcgcggat
781 ctatttgggg acggcacgac ggaggacggc agcgccgcca acgggcgcct gtggcggaca
841 gtgatcatcg gggagcaaga gcaccgtata gacctgcaca tgatccggcc ttacatgaaa
901 gtggtcaccc acggagggta ctacggcgaa ggcctcaacg ccatcatcgt cttcgcagcc
961 tgcttccttc cagacagcag cctccccgac taccactaca tcatggagaa cctcttcctg
1021 tacgtcatca gcagcttaga gctcctggtg gctgaggact acatgatcgt gtacctgaac
1081 ggtgccacgc cccggcggag gatgcctgga atcggctggc tgaagaagtg ctaccagatg
1141 atcgaccgga ggttgcggaa aaacctgaag tccttgatca tcgtccaccc ctcgtggttc
1201 attcggactg tgctggccat ctctcgccct ttcatcagcg tcaagttcat caacaagatc
1261 cagtacgtgc acagcttgga agacctggag caactcatcc ctatggaaca cgtccagatc
1321 ccagactgcg tcctgcaata cgaagaggaa agactgaagg ccaggaggga gagcgcgagg
1381 ccccagccgg agtttgtgct gcccaggtct gaagagaagc cagaggtggc accagtggaa
1441 aacaggtctg ctctggtctc agaagatcag gaaacaagca tgtcctgagg cgacgtgagc
1501 ataacaaagg acatggaaga agattccaga tgccagaaaa cctctgtcag acgcccactg
1561 gccccagatc tcatcctgcc tcatcctgag tcccaatctt ccaagggtgc cagcccctcc
1621 gttcatctct gaaacccagc atccttttca gctgcttgaa aacattgtat tttttttttt
1681 taacgatgca gtatttgtgc gttccagaaa agggcccagc tctgagcccc tcacccttcc
1741 acactcacga actctcagcc gaggaaggca agaagcgcag ggggtggccc gcgtggcgtc
1801 ggtggcctcc gctcctgctc gcagcccctg tggtcagagc tggatacaag attcaagacc
1861 cttctcttgc ttgtcacccg ctccaggttg gagccacaga cacccaccgc caccccggct
1921 gggtctgcgt cctttcctgt gcctttccct ccagaatgcg gcctcagacc tagaagctca
1981 acccccctat gagggccacg tcctggggta gctcctgacc tccgacctta tgtccaaatt
2041 tcacacccat ggtttttcat ttgacccgcc cccttctcgc tcataatgac acccagctcc
2101 tttgagagga tcagagccca ttgcacaaga agagccgctg ccaaccatcc ttgtcctccg
2161 attgcaaaat gacaccccag taatctagaa cattctcaag cccctttaac tcagatgtca
2221 agccaccggg caaaccccgt caatacctcc caccaaggaa tgagatatgt ggacctcact
2281 gctcccccaa cccagcgtca ggctgggaca cgccaacgct gttccgggtt ggaacagcag
2341 aggctcagaa actggctctg aaataggcag acctagcaag aggaagatac agggtatcgg
2401 gcgtttgagt gtttcagaag tcattcggga agataaatcc agtgcgctgg ccgcagccac
2461 ctgcattcaa agcttggacc agcgggttct tgttcgggag gcaaatttcc ctaggaaaaa
2521 gaagacagac ttttctaatg tggtccaaat gcggatcact ggtcagatgg actctagaag
2581 cactgagctc cctgtctctg gaagtattta agaaaaggct gggccaggca cgatggctca
2641 cgcctgtaat cccagacttt gggaggccga ggcaggcgga tcacctgagg tgaggagttt
2701 gagaacagcc tggccaacat ggtgaaacct catctctact aaaaatacaa aaattagcca
2761 ggcgtggtgg caggtgcctg taatcccagc tacttgggag gctgaggcat gagaatcact
2821 taaacctgag aggcagaggt tacagtgagc caagatcgtg ccactgcatt ccagcctggg
2881 cgacagagca agactctgtc tcaaaaaaaa aaaaaaaa
//