LOCUS BC026107 1522 bp mRNA linear HUM 17-NOV-2006
DEFINITION Homo sapiens KRR1, small subunit (SSU) processome component,
homolog (yeast), mRNA (cDNA clone MGC:33072 IMAGE:4827704),
complete cds.
ACCESSION BC026107
VERSION BC026107.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1522)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1522)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC026107.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: p Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37059784.
FEATURES Location/Qualifiers
source 1..1522
/db_xref="H-InvDB:HIT000040110"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33072 IMAGE:4827704"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1522
/gene="KRR1"
/gene_synonym="RIP-1"
/db_xref="GeneID:11103"
/db_xref="HGNC:HGNC:5176"
CDS 25..1170
/gene="KRR1"
/gene_synonym="RIP-1"
/codon_start=1
/product="KRR1, small subunit (SSU) processome component,
homolog (yeast)"
/protein_id="AAH26107.1"
/db_xref="GeneID:11103"
/db_xref="HGNC:HGNC:5176"
/translation="MASPSLERPEKGAGKSEFRNQKPKPENQDESELLTVPDGWKEPA
FSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVC
TTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKR
RQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVALDTMKNIHPIYN
IKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPES
QIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKPKE
ASTETKIDVASIKEKVKKAKNKKLGALTAEEIALKMEADEKKKKKKK"
BASE COUNT 551 a 242 c 324 g 405 t
ORIGIN
1 ggagtcaccg gaagcagctt gcaaatggcg tctccctcgc tggagcggcc agaaaaaggc
61 gctggaaaaa gtgaatttcg taaccagaag ccgaagccgg agaaccaaga tgaatcagaa
121 ctccttacgg ttcctgatgg ttggaaggag ccagcttttt ccaaagagga caatcccaga
181 ggacttttgg aggagagcag tttcgcaact ttgttcccaa aatacaggga agcttacttg
241 aaagagtgtt ggccattggt gcagaaagcc ttaaatgaac atcatgttaa tgcaaccctg
301 gacctgatcg aaggcagcat gactgtttgt actacaaaga agacttttga tccatatatc
361 atcattaggg ccagagatct gataaaactg ttagcaagga gtgtttcatt tgaacaggca
421 gtacgaattc ttcaggatga tgttgcatgt gacatcatta aaataggttc tttagtaagg
481 aataaagaga gatttgtaaa acgaagacaa cggcttattg gtcccaaagg atctacattg
541 aaggcattgg aactcttaac taattgttac attatggttc agggaaacac agtttcagcc
601 attggacctt ttagtggctt aaaagaggtt agaaaagtag cccttgatac tatgaagaat
661 attcatccaa tttataacat taaaagctta atgattaaga gagagttggc aaaagattct
721 gaattacgat cacaaagttg ggagagattt ttgccacagt tcaaacacaa aaatgtgaat
781 aaacgcaagg aaccaaagaa aaaaactgtt aagaaagaat atacgccatt cccaccacca
841 caaccagaaa gtcagatcga taaagaattg gctagtggtg aatacttttt gaaggcaaat
901 cagaagaagc ggcagaaaat ggaagcaata aaggctaaac aagcagaagc catcagtaag
961 agacaagagg aaagaaacaa agcatttatt ccacctaagg aaaaaccaat tgtgaaacct
1021 aaggaagctt ctactgaaac taaaattgat gtggccagca tcaaggaaaa ggttaagaaa
1081 gcaaagaata agaaactggg agctcttaca gctgaagaaa ttgcacttaa gatggaggca
1141 gatgaaaaga aaaagaagaa aaaaaagtaa catacccaaa actccttgac tagaactatc
1201 tccttttgta aaggattttg agatatcagg cattagttgc cttatttgtg agaaattttc
1261 tgagggcttt tttttttttt ggtggtggtg gttgttcata gaagagtgtt ctttataaat
1321 tatattatta ttgtattttt tgaaaaattt atactagaaa gtggtatata tatctttgta
1381 tacattacga ccattgtgat tatccattaa atccagtgtc tgatgctatt ggttagtaat
1441 gatgtcccag catttgatgt tccctctcta atgataacaa gtaaatattt aggtttatcc
1501 cttttgaaaa aaaaaaaaaa aa
//