LOCUS BC026018 3424 bp mRNA linear HUM 12-NOV-2003
DEFINITION Homo sapiens laminin, beta 1, mRNA (cDNA clone IMAGE:3530032),
partial cds.
ACCESSION BC026018
VERSION BC026018.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3424)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3424)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (18-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC026018.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: o Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..3424
/db_xref="H-InvDB:HIT000091158"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3530032"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3424
/gene="LAMB1"
/db_xref="GeneID:3912"
/db_xref="MIM:150240"
CDS <1..3254
/gene="LAMB1"
/codon_start=3
/product="LAMB1 protein"
/protein_id="AAH26018.2"
/db_xref="GeneID:3912"
/db_xref="MIM:150240"
/translation="LVLMPYCKSLDIFTVGGSGDGVVTNSAWETFQRYRCLENSRSVV
KTPMTDVCRNIIFSISALLHQTGLACECDPQGSLSSVCDPNGGQCQCRPNVVGRTCNR
CAPGTFGFGPSGCKPCECHLQGSVNAFCNPVTGQCHCFQGVYARQCDRCLPGHWGFPS
CQPCQCNGHADDCDPVTGECLNCQDYTMGHNCERCLAGYYGDPIIGSGDHCRPCPCPD
GPDSGRQFARSCYQDPVTLQLACVCDPGYIGSRCDDCASGYFGNPSEVGGSCQPCQCH
NNIDTTDPEACDKETGRCLKCLYHTEGEHCQFCRFGYYGDALQQDCRKCVCNYLGTVQ
EHCNGSDCQCDKATGQCLCLPNVIGQNCDRCAPNTWQLASGTGCDPCNCNAAHSFGPS
CNEFTGQCQCMPGFGGRTCSECQELFWGDPDVECRACDCDPRGIETPQCDQSTGQCVC
VEGVEGPRCDKCTRGYSGVFPDCTPCHQCFALWDVIIAELTNRTHRFLEKAKALKISG
VIGPYRETVDSVERKVSEIKDILAQSPAAEPLKNIGNLFEEAEKLIKDVTEMMAQVEV
KLSDTTSQSNSTAKELDSLQTEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQM
SLEAEERVNASTTEPNSTVEQSALMRDRVEDVMMERESQFKEKQEEQARLLYELAGKL
QSLDLSAAAEMTCGTPPGASCSETECGGPNCRTDEGERKCGGPGCGGLVTVAHNAWQK
AMDLDQDVLSALAEVEQLSKMVSEAKLRADEAKQSAEDILLKTNATKEKMDKSNEELR
NLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRERVESLSQVEV
ILQHSAADIARAEMLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIKQAD
EDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELKRKAAQNSGEAEYIEKV
VYTVKQSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARRKAEMLQNEAKTLLAQA
NSKLQLLKDLERKYEDNQRYLEDKAQELARLEGEVRSLLKDISQKVAVYSTCL"
misc_feature 210..356
/gene="LAMB1"
/note="laminin_EGF; Region: Laminin EGF-like (Domains III
and V). This family is like pfam00008 but has 8 conserved
cysteines instead of 6"
/db_xref="CDD:pfam00053"
misc_feature 642..812
/gene="LAMB1"
/note="laminin_EGF; Region: Laminin EGF-like (Domains III
and V). This family is like pfam00008 but has 8 conserved
cysteines instead of 6"
/db_xref="CDD:pfam00053"
misc_feature 819..953
/gene="LAMB1"
/note="laminin_EGF; Region: Laminin EGF-like (Domains III
and V). This family is like pfam00008 but has 8 conserved
cysteines instead of 6"
/db_xref="CDD:pfam00053"
misc_feature 975..1139
/gene="LAMB1"
/note="laminin_EGF; Region: Laminin EGF-like (Domains III
and V). This family is like pfam00008 but has 8 conserved
cysteines instead of 6"
/db_xref="CDD:pfam00053"
misc_feature 1143..1289
/gene="LAMB1"
/note="laminin_EGF; Region: Laminin EGF-like (Domains III
and V). This family is like pfam00008 but has 8 conserved
cysteines instead of 6"
/db_xref="CDD:pfam00053"
misc_feature 1575..3224
/gene="LAMB1"
/note="Myosin_tail; Region: Myosin tail. The myosin
molecule is a multi-subunit complex made up of two heavy
chains and four light chains it is a fundamental
contractile protein found in all eukaryote cell types.
This family consists of the coiled-coil myosin heavy chain
tail region. The coiled-coil is composed of the tail from
two molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament"
/db_xref="CDD:pfam01576"
BASE COUNT 1015 a 758 c 912 g 739 t
ORIGIN
1 ctcttgttct catgccatac tgtaaatcac tggacatctt caccgtggga ggttcaggag
61 atggggtggt caccaacagt gcctgggaaa cctttcagag ataccgatgt ctagagaaca
121 gcagaagcgt tgtgaaaaca ccgatgacag atgtttgcag aaacatcatc tttagcattt
181 ctgccctgtt acaccagaca ggcctggctt gtgaatgcga ccctcagggt tcgttaagtt
241 ccgtgtgtga tcccaacgga ggccagtgcc agtgccggcc caacgtggtt ggaagaacct
301 gcaacagatg tgcacctgga acttttggct ttggccccag tggatgcaaa ccttgtgagt
361 gccatctgca aggatctgtc aatgccttct gcaatcccgt cactggccag tgccactgtt
421 tccagggagt gtatgctcgg cagtgtgatc ggtgcttacc tgggcactgg ggctttccaa
481 gttgccagcc ctgccagtgc aatggccacg ccgatgactg cgacccagtg actggggagt
541 gcttgaactg ccaggactac accatgggtc ataactgtga aaggtgcttg gctggttact
601 atggcgaccc catcattggg tcaggagatc actgccgccc ttgcccttgc ccagatggtc
661 ccgacagtgg acgccagttt gccaggagct gctaccaaga tcctgttact ttacagcttg
721 cctgtgtttg tgatcctgga tacattggtt ccagatgtga cgactgtgcc tcaggatact
781 ttggcaatcc atcagaagtt ggggggtcgt gtcagccttg ccagtgtcac aacaacattg
841 acacgacaga cccagaagcc tgtgacaagg agactgggag gtgtctcaag tgcctgtacc
901 acacggaagg ggaacactgt cagttctgcc ggtttggata ctatggtgat gccctccagc
961 aggactgtcg aaagtgtgtc tgtaattacc tgggcaccgt gcaagagcac tgtaacggct
1021 ctgactgcca gtgcgacaaa gccactggtc agtgcttgtg tcttcctaat gtgatcgggc
1081 agaactgtga ccgctgtgcg cccaatacct ggcagctggc cagtggcact ggctgtgacc
1141 catgcaactg caatgctgct cattccttcg ggccatcttg caatgagttc acggggcagt
1201 gccagtgcat gcctgggttt ggaggccgca cctgcagcga gtgccaggaa ctcttctggg
1261 gagaccccga cgtggagtgc cgagcctgtg actgtgaccc caggggcatt gagacgccac
1321 agtgtgacca gtccacgggc cagtgtgtct gcgttgaggg tgttgagggt ccacgctgtg
1381 acaagtgcac gcgagggtac tcgggggtct tccctgactg cacaccctgc caccagtgct
1441 ttgctctctg ggatgtgatc attgccgagc tgaccaacag gacacacaga ttcctggaga
1501 aagccaaggc cttgaagatc agtggtgtga tcgggcctta ccgtgagact gtggactcgg
1561 tggagaggaa agtcagcgag ataaaagaca tcctggcgca gagccccgca gcagagccac
1621 tgaaaaacat tgggaatctc tttgaggaag cagagaaact gattaaagat gttacagaaa
1681 tgatggctca agtagaagtg aaattatctg acacaacttc ccaaagcaac agcacagcca
1741 aagaactgga ttctctacag acagaagccg aaagcctaga caacactgtg aaagaacttg
1801 ctgaacaact ggaatttatc aaaaactcag atattcgggg tgccttggat agcattacca
1861 agtatttcca gatgtctctt gaggcagagg agagggtgaa tgcctccacc acagaaccca
1921 acagcactgt ggagcagtca gccctcatga gagacagagt agaagacgtg atgatggagc
1981 gagaatccca gttcaaggaa aaacaagagg agcaggctcg cctcctttat gaactggcag
2041 gcaagctaca aagcctagac ctttcagccg ctgccgaaat gacctgtgga acacccccag
2101 gggcctcctg ttccgagact gaatgtggcg ggccaaactg cagaactgac gaaggagaga
2161 ggaagtgtgg ggggcctggc tgtggtggtc tggttactgt tgcacacaac gcctggcaga
2221 aagccatgga cttggaccaa gatgtcctga gtgccctggc tgaagtggaa cagctctcca
2281 agatggtctc tgaagcaaaa ctgagggcag atgaggcaaa acaaagtgct gaagacattc
2341 tgttgaagac aaatgctacc aaagaaaaaa tggacaagag caatgaggag ctgagaaatc
2401 taatcaagca aatcagaaac tttttgaccc aggatagtgc tgatttggac agcattgaag
2461 cagttgctaa tgaagtattg aaaatggaga tgcctagcac cccacagcag ttacagaact
2521 tgacagaaga tatacgtgaa cgagttgaaa gcctttctca agtagaggtt attcttcagc
2581 atagtgctgc tgacattgcc agagctgaga tgttgttaga agaagctaaa agagcaagca
2641 aaagtgcaac agatgttaaa gtcactgcag atatggtaaa ggaagctctg gaagaagcag
2701 aaaaggccca ggtcgcagca gagaaggcaa ttaaacaagc agatgaagac attcaaggaa
2761 cccagaacct gttaacttcg attgagtctg aaacagcagc ttctgaggaa accttgttca
2821 acgcgtccca gcgcatcagc gagttagaga ggaatgtgga agaacttaag cggaaagctg
2881 cccaaaactc cggggaggca gaatatattg aaaaagtagt atatactgtg aagcaaagtg
2941 cagaagatgt taagaagact ttagatggtg aacttgatga aaagtataaa aaagtagaaa
3001 atttaattgc caaaaaaact gaagagtcag ctgatgccag aaggaaagcc gaaatgctac
3061 aaaatgaagc aaaaactctt ttagctcaag caaatagcaa gctgcaactg ctcaaagatt
3121 tagaaagaaa atatgaagac aatcaaagat acttagaaga taaagctcaa gaattagcaa
3181 gactggaagg agaagtccgt tcactcctaa aggatataag ccagaaagtt gctgtgtata
3241 gcacatgctt gtaacagagg agaataaaaa atggctgagg tgaacaaggt aaaacaacta
3301 cattttaaaa actgacttaa tgctcttcaa aataaaacat cacctattta atgtttttaa
3361 tcacattttg tatggagtta aataaagtac agtgcttttg tataaaaaaa aaaaaaaaaa
3421 aaaa
//