LOCUS BC025954 2017 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nei endonuclease VIII-like 3 (E. coli), mRNA (cDNA
clone MGC:39163 IMAGE:4853168), complete cds.
ACCESSION BC025954
VERSION BC025954.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2017)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2017)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (18-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: g Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922721.
FEATURES Location/Qualifiers
source 1..2017
/db_xref="H-InvDB:HIT000040038"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39163 IMAGE:4853168"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2017
/gene="NEIL3"
/gene_synonym="FLJ10858"
/gene_synonym="FPG2"
/gene_synonym="hFPG2"
/gene_synonym="hNEI3"
/db_xref="GeneID:55247"
/db_xref="HGNC:HGNC:24573"
/db_xref="MIM:608934"
CDS 74..1891
/gene="NEIL3"
/gene_synonym="FLJ10858"
/gene_synonym="FPG2"
/gene_synonym="hFPG2"
/gene_synonym="hNEI3"
/codon_start=1
/product="nei endonuclease VIII-like 3 (E. coli)"
/protein_id="AAH25954.1"
/db_xref="GeneID:55247"
/db_xref="HGNC:HGNC:24573"
/db_xref="MIM:608934"
/translation="MVEGPGCTLNGEKIRARVLPGQAVTGVRGSALRSLQGRALRLAA
STVVVSPQAAALNNDSSQNVLSLFNGYVYSGVETLGKELFMYFGPKALRIHFGMKGFI
MINPLEYKYKNGASRVLEVQLTKDLICFFDSSVELRNSMESQQRIRMMKELDVCSPEF
SFLRAESEVKKQKGRMLGDVLMDQNVLPGVGNIIKNEALFDSGLHPAVKVCQLTDEQI
HHLMKMIRDFSILFYRCRKAGLALSKHYKVYKRPNCGQCHCRITVCRFGDNNRMTYFC
PHCQKENPQHVDICKLPTRNTIISWTSSRVDHVMDSVARKSEEHWTCVVCTLINKPSS
KACDACLTSRPIDSVLKSEENSTVFSHLMKYPCNTFGKPHTEVKINRKTAFGTTTLVL
TDFSNKSSTLERKTKQNQILDEEFQNSPPASVCLNDIQHPSKKTTNDITQLSSKVNIS
PTISSESKLFSPAHKKPKTAHYSSPELKSCNPGYSNSELQINMTDGPRTLNPDSPRCS
KHNRLCILRVVRKDGENKGRQFYACPLPREAQCGFFEWADLSFPFCNHGKRSTMKTVL
KIGPNNGKNFFVCPLGKEKQCNFFQWAENGPGIKIIPGC"
BASE COUNT 624 a 419 c 446 g 528 t
ORIGIN
1 gcgcagcgtt gagttgcaca gcggtattct caccaggccc tgcaatcggt gggccacagt
61 gccggccaca gagatggtgg aaggaccagg ctgtactctg aatggagaga agattcgagc
121 gcgggtgctc ccgggccagg cggtgaccgg cgtgcgggga agcgctctgc ggagtctgca
181 gggccgcgcc ttgcggctcg cagcctccac ggttgtggtc tccccgcagg ctgctgcact
241 gaataatgat tccagccaga atgtcttgag cctgtttaat ggatatgttt acagtggcgt
301 ggaaactttg gggaaggagc tctttatgta ctttggacca aaagctttac ggattcattt
361 cggaatgaaa ggcttcatca tgattaatcc acttgagtat aaatataaaa atggagcttc
421 tcgtgttttg gaagtgcagc tcaccaaaga tttgatttgt ttctttgact catcagtaga
481 actcagaaac tcaatggaaa gccaacagag aataagaatg atgaaagaat tagatgtatg
541 ttcacctgaa tttagtttct tgagagcaga aagtgaagtt aaaaaacaga aaggccggat
601 gctaggtgat gtgctaatgg atcagaacgt attgcctgga gtagggaaca tcatcaaaaa
661 tgaagctctc tttgacagtg gtctccaccc agctgttaaa gtttgtcaat taacagatga
721 acagatccat cacctcatga aaatgatacg tgatttcagc attctctttt acaggtgccg
781 taaagcagga cttgctctct ctaaacacta taaggtttac aagcgtccca attgtggtca
841 gtgccactgc agaataactg tgtgccgctt tggggacaat aacagaatga catatttctg
901 tcctcactgt caaaaagaaa atcctcaaca tgttgacata tgcaagctac cgactagaaa
961 tactataatc agttggacat ctagcagggt ggatcatgtt atggactccg tggctcggaa
1021 gtcggaagag cactggacct gtgtggtgtg tactttaatc aataagccct cttctaaggc
1081 atgtgatgct tgcttgacct caaggcctat tgattcagtg ctcaagagtg aagaaaattc
1141 tactgtcttt agccacttaa tgaagtaccc gtgtaatact tttggaaaac ctcatacaga
1201 agtcaagatc aacaggaaaa ctgcatttgg aactacaact cttgtcttga ctgattttag
1261 caataaatcc agtactttgg aaagaaaaac aaagcaaaac cagatactag atgaggagtt
1321 tcaaaactct cctcctgcta gtgtgtgttt gaatgatata cagcacccct ccaagaagac
1381 aacaaacgat ataactcaac tatccagcaa agtaaacata tcacctacaa tcagttcaga
1441 atctaaatta tttagtccag cacataaaaa accgaaaaca gcccactact catcaccaga
1501 gcttaaaagc tgcaaccctg gatattctaa cagtgaactt caaattaata tgacagatgg
1561 ccctcgtacc ttaaatcctg acagccctcg ctgcagtaaa cacaaccgcc tctgcattct
1621 ccgagttgtg aggaaggatg gggaaaacaa gggcaggcag ttttatgcct gtcctctacc
1681 tagagaagca caatgtggat tttttgaatg ggcagatttg tccttcccat tctgcaacca
1741 tggcaagcgt tccaccatga aaacagtatt gaagattgga cctaacaatg gaaagaattt
1801 ttttgtgtgt cctcttggga aggaaaaaca atgcaatttt ttccagtggg cagaaaatgg
1861 gccaggaata aaaattattc ctggatgcta atatctgtag attctctggc atttagtctc
1921 ttcaaactgt gtataatgtt tggtcctcct ctgtttcata gaaaagtcat agaatatgat
1981 acattgaaaa gttactgcaa aaaaaaaaaa aaaaaaa
//