LOCUS BC025787 1969 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens alkB, alkylation repair homolog 1 (E. coli), mRNA
(cDNA clone MGC:34444 IMAGE:5229152), complete cds.
ACCESSION BC025787
VERSION BC025787.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1969)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1969)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: p Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5174384.
FEATURES Location/Qualifiers
source 1..1969
/db_xref="H-InvDB:HIT000040026"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34444 IMAGE:5229152"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1969
/gene="ALKBH1"
/gene_synonym="ABH"
/gene_synonym="alkB"
/gene_synonym="hABH"
/db_xref="GeneID:8846"
/db_xref="HGNC:HGNC:17911"
/db_xref="MIM:605345"
CDS 10..1179
/gene="ALKBH1"
/gene_synonym="ABH"
/gene_synonym="alkB"
/gene_synonym="hABH"
/codon_start=1
/product="alkB, alkylation repair homolog 1 (E. coli)"
/protein_id="AAH25787.1"
/db_xref="GeneID:8846"
/db_xref="HGNC:HGNC:17911"
/db_xref="MIM:605345"
/translation="MGKMAAAVGSVATLATEPGEDAFRKLFRFYRQSRPGTADLEGVI
DFSAAHAARGKGPGAQKVIKSQLNVSSVSEQNAYRAGLQPVSKWQAYGLKGYPGFIFI
PNPFLPGYQWHWVKQCLKLYSQKPNVCNLDKHMSKEETQDLWEQSKEFLRYKEATKRR
PRSLLEKLRWVTVGYHYNWDSKKYSADHYTPFPSDLGFLSEQVAAACGFEDFRAEAGI
LNYYRLDSTLGIHVDRSELDHSKPLLSFSFGQSAIFLLGGLQRDEAPTAMFMHSGDIM
IMSGFSRLLNHAVPRVLPNPEGEGLPHCLEAPLPAVLPRDSMVEPCSMEDWQVCASYL
KTARVNMTVRQVLATDQNFPLEPIEDEKRDISTEGFCHLDDQNSEVKRARINPHS"
BASE COUNT 538 a 477 c 444 g 510 t
ORIGIN
1 ggccgcgaga tggggaagat ggcagcggcc gtgggctctg tggcgactct ggcgactgag
61 cccggggagg acgcctttcg gaaacttttc cgcttctacc gtcagagccg gcccgggacc
121 gcagacctgg aaggggtcat cgacttctcg gcggcccacg cagcccgtgg caagggtcct
181 ggtgcccaaa aggtgatcaa atctcagcta aatgtgtctt ctgtcagtga gcagaatgca
241 tatagagcag gtcttcagcc cgtcagcaag tggcaagcct atggactcaa aggctatcct
301 gggtttattt ttatcccaaa ccccttcctc ccaggttacc agtggcactg ggtgaaacag
361 tgccttaagt tatattccca gaaacctaat gtatgtaacc tggacaaaca catgtctaaa
421 gaagagaccc aagatctgtg ggaacagagc aaagagttcc tgaggtataa agaagcgact
481 aaacggagac cccgaagttt actggagaaa ctgcgttggg tgaccgtagg ctaccattat
541 aactgggaca gtaagaaata ctcagcagat cattacacac ctttcccttc tgacctgggt
601 ttcctctcag agcaagtagc cgctgcctgt ggatttgagg atttccgagc tgaagcaggg
661 atcctgaatt actaccgcct ggactccaca ctgggaatcc acgtagacag atctgagcta
721 gatcactcca aacccttgct gtcattcagc tttggacagt ccgccatctt tctcctgggt
781 ggtcttcaaa gggatgaggc ccccacggcc atgtttatgc acagtggtga catcatgata
841 atgtcgggtt tcagccgcct cttgaaccac gcagtccctc gtgtccttcc aaatccagaa
901 ggggaaggcc tgcctcactg cctagaggca cctctccctg ctgtcctccc gagagattca
961 atggtagagc cttgttctat ggaggactgg caggtgtgtg ccagctactt gaagaccgct
1021 cgtgttaaca tgactgtccg acaggtcctg gccacagacc agaatttccc tctagaaccc
1081 atcgaggatg aaaaaagaga catcagtaca gaaggtttct gccatctgga tgaccagaat
1141 agcgaagtaa aacgggccag gataaaccct cacagctgag acttggagat cccatccttt
1201 ttactcaggc acctgcttac cgtaaatgat catgttattg tgtattgccg tggacttcag
1261 cacccagaca agccaaaaac agagacaggg aagaactcat tgttgatcac actgttgcct
1321 tggaacccac gcagaagtaa actcatccac tttgctcaga gaagtgtttg acatggtctg
1381 ttcctagtta catgttggct gtaatgtatg ttgagaagtc agtccaagga ggtatgttct
1441 tccacaacag ccttctcagc ctctgctatt tcctttgagg aaggtagaag tgagtttcca
1501 tgtttgcaga gtatttaaat acctcagatt ttattaatga gaaatacagt acccctccct
1561 ccactccatc tggtaattta tggtaaaatt gtggttctgt gaaccagcta ttagtctcat
1621 cttcttaact ccctcaggca tcatcaaatt ctttgatctt ctcttccacc tctctggctc
1681 tcatggaaga atcctttaca catgaaaaca atggaactgg aaaatcttgt cttttagaaa
1741 agaaattaat cacaactatc tctcttgcct aaaagataaa tataggtaaa cccaaggaaa
1801 ggggaattta gtttctctac atgtcatttc ggtctccaaa ctccctgttg gctttttaat
1861 gcaattttaa ttgttggaat aaaaaagtcc caagggtgtt ttgttactgt tttctccatg
1921 aataaactca cttgatttta aattaaaaaa aaaaaaaaaa aaaaaaaaa
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