LOCUS BC025718 2313 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens peptidyl arginine deiminase, type IV, mRNA (cDNA clone
MGC:34387 IMAGE:5228777), complete cds.
ACCESSION BC025718
VERSION BC025718.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2313)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2313)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: o Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6912575.
FEATURES Location/Qualifiers
source 1..2313
/db_xref="H-InvDB:HIT000039984"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34387 IMAGE:5228777"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2313
/gene="PADI4"
/gene_synonym="PAD"
/gene_synonym="PDI4"
/gene_synonym="PDI5"
/db_xref="GeneID:23569"
/db_xref="HGNC:HGNC:18368"
/db_xref="MIM:605347"
CDS 13..2004
/gene="PADI4"
/gene_synonym="PAD"
/gene_synonym="PDI4"
/gene_synonym="PDI5"
/codon_start=1
/product="peptidyl arginine deiminase, type IV"
/protein_id="AAH25718.1"
/db_xref="GeneID:23569"
/db_xref="HGNC:HGNC:18368"
/db_xref="MIM:605347"
/translation="MAQGTLIRVTPEQPTHAVCVLGTLTQLDICSSAPEDCTSFSINA
SPGVVVDIAHSPPAKKKSTGSSTWPLDPGVEVTLTMKAASGSTGDQKVQISYYGPKTP
PVKALLYLTAVEISLCADITRTGKVKPTRAVKDQRTWTWGPCGQGAILLVNCDRDNLE
SSAMDCEDDEVLDSEDLQDMSLMTLSTKTPKDFFTNHTLVLHVARSEMDKVRVFQATR
GKLSSKCSVVLGPKWPSHYLMVPGGKHNMDFYVEALAFPDTDFPGLITLTISLLDTSN
LELPEAVVFQDSVVFRVAPWIMTPNTQPPQEVYACSIFENEDFLKSVTTLAMKAKCKL
TICPEEENMDDQWMQDEMEIGYIQAPHKTLPVVFDSPRNRGLKEFPIKRVMGPDFGYV
TRGPQTGGISGLDSFGNLEVSPPVTVRGKEYPLGRILFGDSCYPSNDSRQMHQALQDF
LSAQQVQAPVKLYSDWLSVGHVDEFLSFVPAPDRKGFRLLLASPRSCYKLFQEQQNEG
HGEALLFEGIKKKKQQKIKNILSNKTLREHNSFVERCIDWNRELLKRELGLAESDIID
IPQLFKLKEFSKAEAFFPNMVNMLVLGKHLGIPKPFGPVINGRCCLEEKVCSLLEPLG
LQCTFINDFFTYHIRHGEVHCGTNVRRKPFSFKWWNMVP"
BASE COUNT 575 a 667 c 616 g 455 t
ORIGIN
1 gctagcccga cgatggccca ggggacattg atccgtgtga ccccagagca gcccacccat
61 gccgtgtgtg tgctgggcac cttgactcag cttgacatct gcagctctgc ccctgaggac
121 tgcacgtcct tcagcatcaa cgcctcccca ggggtggtcg tggatattgc ccacagccct
181 ccagccaaga agaaatccac aggttcctcc acatggcccc tggaccctgg ggtagaggtg
241 accctgacga tgaaagcggc cagtggtagc acaggcgacc agaaggttca gatttcatac
301 tacggaccca agactccacc agtcaaagct ctactctacc tcaccgcggt ggaaatctcc
361 ctgtgcgcag acatcacccg caccggcaaa gtgaagccaa ccagagctgt gaaagatcag
421 aggacctgga cctggggccc ttgtggacag ggtgccatcc tgctggtgaa ctgtgacaga
481 gacaatctcg aatcttctgc catggactgc gaggatgatg aagtgcttga cagcgaagac
541 ctgcaggaca tgtcgctgat gaccctgagc acgaagaccc ccaaggactt cttcacaaac
601 catacactgg tgctccacgt ggccaggtct gagatggaca aagtgagggt gtttcaggcc
661 acacggggca aactgtcctc caagtgcagc gtagtcttgg gtcccaagtg gccctctcac
721 tacctgatgg tccccggtgg aaagcacaac atggacttct acgtggaggc cctcgctttc
781 ccggacaccg acttcccggg gctcattacc ctcaccatct ccctgctgga cacgtccaac
841 ctggagctcc ccgaggctgt ggtgttccaa gacagcgtgg tcttccgcgt ggcgccctgg
901 atcatgaccc ccaacaccca gcccccgcag gaggtgtacg cgtgcagtat ttttgaaaat
961 gaggacttcc tgaagtcagt gactactctg gccatgaaag ccaagtgcaa gctgaccatc
1021 tgccctgagg aggagaacat ggatgaccag tggatgcagg atgaaatgga gatcggctac
1081 atccaagccc cacacaaaac actgcccgtg gtcttcgact ctccaaggaa cagaggcctg
1141 aaggagtttc ccatcaaacg agtgatgggt ccagattttg gctatgtaac tcgagggccc
1201 caaacagggg gtatcagtgg actggactcc tttgggaacc tggaagtgag ccccccagtc
1261 acagtcaggg gcaaggaata cccgctgggc aggattctct tcggggacag ctgttatccc
1321 agcaatgaca gccggcagat gcaccaggcc ctgcaggact tcctcagtgc ccagcaggtg
1381 caggcccctg tgaagctcta ttctgactgg ctgtccgtgg gccacgtgga cgagttcctg
1441 agctttgtgc cagcacccga caggaagggc ttccggctgc tcctggccag ccccaggtcc
1501 tgctacaaac tgttccagga gcagcagaat gagggccacg gggaggccct gctgttcgaa
1561 gggatcaaga aaaaaaaaca gcagaaaata aagaacattc tgtcaaacaa gacattgaga
1621 gaacataatt catttgtgga gagatgcatc gactggaacc gcgagctgct gaagcgggag
1681 ctgggcctgg ccgagagtga catcattgac atcccgcagc tcttcaagct caaagagttc
1741 tctaaggcgg aagctttttt ccccaacatg gtgaacatgc tggtgctagg gaagcacctg
1801 ggcatcccca agcccttcgg gcccgtcatc aacggccgct gctgcctgga ggagaaggtg
1861 tgttccctgc tggagccact gggcctccag tgcaccttca tcaacgactt cttcacctac
1921 cacatcaggc atggggaggt gcactgcggc accaacgtgc gcagaaagcc cttctccttc
1981 aagtggtgga acatggtgcc ctgagcccat cttccctggc gtcctctccc tcctggccag
2041 atgtcgctgg gtcctctgca gtgtggcaag caagagctct tgtgaatatt gtggctccct
2101 gggggcggcc agccctccca gcagtggctt gctttcttct cctgtgatgt cccagtttcc
2161 cactctgaag atcccaacat ggtcctagca ctgcacactc agttctgctc taagaagctg
2221 caataaagtt tttttaagtc actttgtaca tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2281 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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