LOCUS BC025407 1772 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens layilin, mRNA (cDNA clone MGC:33525 IMAGE:4820414),
complete cds.
ACCESSION BC025407
VERSION BC025407.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1772)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1772)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: h Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31343533.
FEATURES Location/Qualifiers
source 1..1772
/db_xref="H-InvDB:HIT000039935"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33525 IMAGE:4820414"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1772
/gene="LAYN"
/gene_synonym="FLJ30977"
/gene_synonym="FLJ31092"
/db_xref="GeneID:143903"
/db_xref="HGNC:HGNC:29471"
CDS 130..1254
/gene="LAYN"
/gene_synonym="FLJ30977"
/gene_synonym="FLJ31092"
/codon_start=1
/product="layilin"
/protein_id="AAH25407.1"
/db_xref="GeneID:143903"
/db_xref="HGNC:HGNC:29471"
/translation="MRPGTALQAVLLAVLLVGLRAATGRLLSGQPVCRGGTQRPCYKV
IYFHDTSRRLNFEEAKEACRRDGGQLVSIESEDEQKLIEKFIENLLPSDGDFWIGLRR
REEKQSNSTACQDLYAWTDGSISQFRNWYVDEPSCGSEVCVVMYHQPSAPAGIGGPYM
FQWNDDRCNMKNNFICKYSDEKPAVPSREAEGEETELTTPVLPEETQEEDAKKTFKES
REAALNLAYILIPSIPLLLLLVVTTVVCWVWICRKRKREQPDPSTKKQHTIWPSPHQG
NSPDLEVYNVIRKQSEADLAETRPDLKNISFRVCSGEATPDDMSCDYDNMAVNPSESG
FMTLVSVESGFVTNDIYEFSPDQMGRSKESGWVENEIYGY"
BASE COUNT 506 a 410 c 461 g 395 t
ORIGIN
1 agcgggtgcg gtccgtcggt ggcctagaga tgctgctgcc gcggttgcag ttgtcgcgca
61 cgcctctgcc cgccagcccg ctccaccgcc gtagcgcccg agtgtcgggg ggcgcacccg
121 agtcgggcca tgaggccggg aaccgcgcta caggcggtgc tgctggccgt gctgctggtg
181 gggctgcggg ccgcgacggg tcgcctgctg agtgggcagc cagtctgccg gggagggaca
241 cagaggcctt gttataaagt catttacttc catgatactt ctcgaagact gaactttgag
301 gaagccaaag aagcctgcag gagggatgga ggccagctag tcagcatcga gtctgaagat
361 gaacagaaac tgatagaaaa gttcattgaa aacctcttgc catctgatgg tgacttctgg
421 attgggctca ggaggcgtga ggagaaacaa agcaatagca cagcctgcca ggacctttat
481 gcttggactg atggcagcat atcacaattt aggaactggt atgtggatga gccgtcctgc
541 ggcagcgagg tctgcgtggt catgtaccat cagccatcgg cacccgctgg catcggaggc
601 ccctacatgt tccagtggaa tgatgaccgg tgcaacatga agaacaattt catttgcaaa
661 tattctgatg agaaaccagc agttccttct agagaagctg aaggtgagga aacagagctg
721 acaacacctg tacttccaga agaaacacag gaagaagatg ccaaaaaaac atttaaagaa
781 agtagagaag ctgccttgaa tctggcctac atcctaatcc ccagcattcc ccttctcctc
841 ctccttgtgg tcaccacagt tgtatgttgg gtttggatct gtagaaaaag aaaacgggag
901 cagccagacc ctagcacaaa gaagcaacac accatctggc cctctcctca ccagggaaac
961 agcccggacc tagaggtcta caatgtcata agaaaacaaa gcgaagctga cttagctgag
1021 acccggccag acctgaagaa tatttcattc cgagtgtgtt cgggagaagc cactcccgat
1081 gacatgtctt gtgactatga caacatggct gtgaacccat cagaaagtgg gtttatgact
1141 ctggtgagcg tggagagtgg atttgtgacc aatgacattt atgagttctc cccagaccaa
1201 atggggagga gtaaggagtc tggatgggtg gaaaatgaaa tatatggtta ttaggacata
1261 taaaaaactg aaactgacaa caatggaaaa gaaatgataa gcaaaatcct cttattttct
1321 ataaggaaaa tacacagaag gtctatgaac aagcttagat caggtcctgt ggatgagcat
1381 gtggtcccca cgacctcctg ttggaccccc acgttttggc tgtatccttt atcccagcca
1441 gtcatccagc tcgaccttat gagaaggtac cttgcccagg tctggcacat agtagagtct
1501 caataaatgt cacttggttg gttgtatcta acttttaagg gacagagctt tacctggcag
1561 tgataaagat gggctgtgga gcttggaaaa ccacctctgt tttccttgct ctatacagca
1621 gcacatatta tcatacagac agaaaatcca gaatcttttc aaagcccaca tatggtagca
1681 caggttggcc tgtgcatcgg caattctcat atctgttttt ttcaaagaat aaaatcaaat
1741 aaagagcagg aaacagaaaa aaaaaaaaaa aa
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