LOCUS BC025383 1925 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens spermatogenesis and oogenesis specific basic
helix-loop-helix 2, mRNA (cDNA clone MGC:26186 IMAGE:4829809),
complete cds.
ACCESSION BC025383
VERSION BC025383.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1925)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1925)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC025383.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 34 Row: h Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8923418.
FEATURES Location/Qualifiers
source 1..1925
/db_xref="H-InvDB:HIT000039918"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26186 IMAGE:4829809"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1925
/gene="SOHLH2"
/gene_synonym="bA121N13.2"
/gene_synonym="FLJ20449"
/gene_synonym="TEB1"
/db_xref="GeneID:54937"
/db_xref="HGNC:HGNC:26026"
CDS 63..740
/gene="SOHLH2"
/gene_synonym="bA121N13.2"
/gene_synonym="FLJ20449"
/gene_synonym="TEB1"
/codon_start=1
/product="SOHLH2 protein"
/protein_id="AAH25383.1"
/db_xref="GeneID:54937"
/db_xref="HGNC:HGNC:26026"
/translation="MASSIICQEHCQISGQAKIDILLVGDVTVGYLADTVQKLFANIA
EVTITISDTKEAAALLDDCIFNMVLLKVPSSLSAEELEAIKLIRFGKKKNTHSLFVFI
IPENFKGCISGHGMDIALTEPLTMEKMSNVVKYWTTCPSNTVKTENATGPEELGLPLQ
RSYSEHLGYFPTDLFACSESLRNGNGLELNASLSEFEKNKKISLLHSSKEKLRRLYRK
HSSFCFW"
BASE COUNT 564 a 429 c 410 g 522 t
ORIGIN
1 agcggctgtg gagctcctcc tgctgggagg ctgccccagg acccagcacg tgcgcagcgg
61 ccatggcttc ctcaattatc tgccaggagc actgccagat ctcgggccag gcaaaaatag
121 acatcttatt agttggagat gtcactgtgg gctacctggc tgatactgta cagaaactat
181 ttgcaaacat agcagaagtc accatcacca tcagtgacac gaaggaggca gcagcgcttt
241 tggatgattg catattcaac atggttctct tgaaggtgcc ttcttcacta agtgccgagg
301 agctggaagc catcaagtta attagatttg gcaaaaagaa aaatacacat tcactgtttg
361 tttttataat ccctgaaaat tttaaaggtt gtatttcagg gcatggaatg gatattgctt
421 taactgaacc actgacaatg gaaaaaatga gtaatgtggt aaaatactgg acaacatgtc
481 cctcaaacac tgttaagact gaaaacgcaa ctgggcctga agaacttgga ttgcccctgc
541 agaggtccta cagcgaacac ctgggatatt ttcctactga tctatttgcc tgctctgaat
601 ctttaaggaa tggcaatggg cttgaattaa atgcttcgtt gtcagagttc gagaaaaaca
661 aaaagatctc tcttcttcat tcaagcaagg aaaaactaag aaggctgtac aggaagcata
721 gcagcttctg tttctggtga gccctcagga agcttacaat catggcagga ggcaaagtgg
781 agccaatgtg tcacatagca agaggaggag caagagagag agaaaggaga ggccccaaac
841 tcttttaaac caccagatct tgcatgaact gagtgagaac tcactcatca ccaaggggat
901 ggcgctaagc taagccctag agtgccccca tgatttaaca cctcccacca ggttccacct
961 ccaacattgg gcatcacatt tcaccataag atttggaggg gacaaaacat ccaagccaca
1021 tcagttatca acccagcatt gttatttgtt ttgcttaaac agtaagctgt cgcccagtta
1081 tctaatactg tacaacagat tactctgaaa cttggtagtg gaaatcaaca aactgtttat
1141 catatctcat gattttgtga gtcaccagtt tgggcagagc ttggctctgt gattcttctc
1201 agtgtggtgt taaccatggc actccgtgat gttcagccag caaaactggc ctgtctggag
1261 attccagcgc agcgtcatcc acacatgtgg tcttctggtg ggtgtggctg caggttgtgc
1321 tcaaatgggc tgttcttccc tgtggtctca tcacttctcc acatggtatc tccagcaagc
1381 tagaaggacc tcttacatga aggcttagga ttccatgaga ccagtgtgaa agctacatct
1441 tctgaaatgc tggtcccaga actctcatag agtcactctc cagatatctt ttgattaaag
1501 caggcacagg ccagtgaaga ttcaagagga gaggaaatgg accctgactc ttcgttggag
1561 aaataagtaa ttttcagtga ctttaatctt aactcttatc tttttaaccc aaatttcaga
1621 ttcttgtttg cagtagaaca ggctcttcac tgtatacaag attttgtctg agttgcaaaa
1681 attctctccc catgaatttc cctgtattac catcttttgc tcctgcattt ccccactcag
1741 tcttggctgc cacaatcaaa gggacataaa gtacaaggac acttttttct tgcctctgta
1801 gtagaaatct tagcagtata cagctgctct aggcctgtca aataaatata tactattggt
1861 ttttaaaaca ttaataaatt agaaaactac cctttaatgt atgccaccac aaaaaaaaaa
1921 aaaaa
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