LOCUS BC025310 1832 bp mRNA linear HUM 12-FEB-2004
DEFINITION Homo sapiens leucine rich repeat and fibronectin type III domain
containing 1, mRNA (cDNA clone IMAGE:3626429), partial cds.
ACCESSION BC025310
VERSION BC025310.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1832)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1832)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: a Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..1832
/db_xref="H-InvDB:HIT000091029"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3626429"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1832
/gene="LRFN1"
/gene_synonym="KIAA1484"
/db_xref="GeneID:57622"
CDS <1..1629
/gene="LRFN1"
/gene_synonym="KIAA1484"
/codon_start=1
/product="LRFN1 protein"
/protein_id="AAH25310.1"
/db_xref="GeneID:57622"
/translation="LFLRSQGTGPKPPTPLTVSFGGNPLHCNCELLWLRRLTREDDLE
TCATPEHLTDRYFWSIPEEEFLCEPPLITRQAGGRALVVEGQAVSLRCRAVGDPEPVV
HWVAPDGRLLGNSSRTRVRGDGTLDVTITTLRDSGTFTCIASNAAGEATAPVEVCVVP
LPLMAPPPAAPPPLTEPGSSDIATPGRPGANDSAAERRLVAAELTSNSVLIRWPAQRP
VPGIRMYQVQYNSSVDDSLVYRMIPSTSQTFLVNDLAAGRAYDLCVLAVYDDGATALP
ATRVVGCVQFTTAGDPAPCRPLRAHFLGGTMIIAIGGVIVASVLVFIVLLMIRYKVYG
DGDSRRVKGSRSLPRVSHVCSQTNGAGTGAAQAPALPAQDHYEALREVESQAAPAVAV
EAKAMEAETASAEPEVVLGRSLGGSATSLCLLPSEETSGEESRAAVGPRRSRSGALEP
PTSAPPTLALVPGGAAARPRPQQRYSFDGDYGALFQSHSYPRRARRTKRHRSTPHLDG
AGGGAAGEDGDLGLGSARACLAFTSTEWMLESTV"
misc_feature 67..165
/gene="LRFN1"
/gene_synonym="KIAA1484"
/note="LRRCT; Region: Leucine rich repeat C-terminal
domain"
/db_xref="CDD:smart00082"
misc_feature 208..468
/gene="LRFN1"
/gene_synonym="KIAA1484"
/note="IGcam; Region: Immunoglobulin domain cell adhesion
molecule (cam) subfamily"
/db_xref="CDD:cd00931"
misc_feature 589..813
/gene="LRFN1"
/gene_synonym="KIAA1484"
/note="fn3; Region: Fibronectin type III domain"
/db_xref="CDD:pfam00041"
BASE COUNT 350 a 600 c 606 g 276 t
ORIGIN
1 ctcttcctga ggtcgcaggg caccgggccc aagccgccca ccccgctgac cgtcagcttc
61 ggcggcaacc ccctgcactg caactgcgag ctgctctggc tgcggcggct gacccgcgag
121 gacgacttag agacctgcgc cacgcccgaa cacctcaccg accgctactt ctggtccatc
181 cccgaggagg agttcctgtg tgagcccccg ctgatcacac ggcaggcggg gggccgggcc
241 ctggtggtgg aaggccaggc ggtgagcctg cgctgccgag cggtgggtga ccccgagccg
301 gtggtgcact gggtggcacc tgatgggcgg ctgctgggga actccagccg gacccgggtc
361 cggggggacg ggacgctgga tgtgaccatc accaccttga gggacagtgg caccttcact
421 tgtatcgcct ccaatgctgc tggggaagcg acggcgcccg tggaggtgtg cgtggtacct
481 ctgcctctga tggcaccccc gccggctgcc ccgccgcctc tcaccgagcc cggctcctct
541 gacatcgcca cgccgggcag accaggtgcc aacgattctg cggctgagcg tcggctcgtg
601 gcagccgagc tcacctcgaa ctccgtgctc atccgctggc cagcccagag gcctgtgccc
661 ggaatacgca tgtaccaggt tcagtacaac agttccgttg atgactccct cgtctacagg
721 atgatcccgt ccaccagtca gaccttcctg gtgaatgacc tggcggcggg ccgtgcctac
781 gacttgtgcg tgctggcggt ctacgacgac ggggccacag cgctgccggc aacgcgagtg
841 gtgggctgtg tacagttcac caccgctggg gatccggcgc cctgccgccc gctgagggcc
901 catttcttgg gcggcaccat gatcatcgcc atcgggggcg tcatcgtcgc ctcggtcctc
961 gtcttcatcg ttctgctcat gatccgctat aaggtgtatg gcgacgggga cagccgccgc
1021 gtcaagggct ccaggtcgct cccgcgggtc agccacgtgt gctcgcagac caacggcgca
1081 ggcacaggcg cggcacaggc cccggccctg ccggcccagg accactacga ggcgctgcgc
1141 gaggtggagt cccaggctgc ccccgccgtc gccgtcgagg ccaaggccat ggaggccgag
1201 acggcatccg cggagccgga ggtggtcctt ggacgttctc tgggcggctc ggccacctcg
1261 ctgtgcctgc tgccatccga ggaaacttcc ggggaggagt ctcgggccgc ggtgggccct
1321 cgaaggagcc gatccggcgc cctggagcca ccaacctcgg cgccccctac tctagctcta
1381 gttcctgggg gagccgcggc ccggccgagg ccgcagcagc gctattcgtt cgacggggac
1441 tacggggcac tattccagag ccacagttac ccgcgccgcg cccggcggac aaagcgccac
1501 cggtccacgc cgcacctgga cggggctgga gggggcgcgg ccggggagga tggagacctg
1561 gggctgggct ccgccagggc gtgcctggct ttcaccagca ccgagtggat gctggagagt
1621 accgtgtgag cggcgggcgg gcgccgggac gcctgggtgc cgcagaccaa acgcccagcc
1681 gcacggacgc tggggcggga ctgggagaaa gcggctgtgc agacattcaa ttgttattat
1741 tatgtaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1801 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//