LOCUS BC025303 1253 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens HMG box domain containing 4, mRNA (cDNA clone
IMAGE:3949218), partial cds.
ACCESSION BC025303
VERSION BC025303.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1253)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1253)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC025303.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: b Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51173872.
FEATURES Location/Qualifiers
source 1..1253
/db_xref="H-InvDB:HIT000091026"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3949218"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_9"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>1253
/gene="HMGXB4"
/gene_synonym="HMGBCG"
/gene_synonym="THC211630"
/db_xref="GeneID:10042"
/db_xref="HGNC:HGNC:5003"
/db_xref="MIM:604702"
CDS 70..>1253
/gene="HMGXB4"
/gene_synonym="HMGBCG"
/gene_synonym="THC211630"
/codon_start=1
/product="HMGXB4 protein"
/protein_id="AAH25303.1"
/db_xref="GeneID:10042"
/db_xref="HGNC:HGNC:5003"
/db_xref="MIM:604702"
/translation="MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREKKRSYKDFLREE
EEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYYYGDISSLESSQKKKKKSS
PQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELP
LEDGVSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQA
TVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAE
SHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKH
KEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKK
KE"
BASE COUNT 409 a 283 c 306 g 255 t
ORIGIN
1 gacctggtcc tgtagacggg aaggagcctg gacacagtga cacattctca aaggccctgc
61 aggaccacca tggcttatga tgactccgtg aagaaagaag attgttttga tggtgatcat
121 acctttgagg acataggact tgcagctggc cgaagccaac gagagaaaaa acgttcttac
181 aaagattttt taagggaaga ggaagaaatt gctgctcagg tcaggaattc ttccaagaag
241 aagttgaagg atagtgaact ttacttcttg gggacggaca cacacaagaa gaagaggaag
301 cactcctctg atgattacta ctatggagat atttcgtctt tggaatcgtc acagaagaaa
361 aagaaaaagt ccagcccaca gtctactgat acagctatgg acctgttgaa agctatcact
421 tccccactgg cagcaggctc caagccctcc aaaaagactg gggagaaatc ctctggctct
481 tcaagccatt cggagagtaa aaaggagcac cacaggaaga aagtcagtgg aagcagtggg
541 gaactacccc tagaggatgg tgtctcccac aaatcgaaaa aaatgaaacc tctctatgtg
601 aacacagaga cactgaccct tcgggagcct gatggtttaa aaatgaaact tattctgtca
661 ccaaaggaga agggaagcag ctctgttgat gaggagtctt ttcaatatcc ctcccaacaa
721 gcgactgtga aaaaatcctc aaagaaatca gctcgggatg agcagggtgc tttactccta
781 ggacatgagt tacagagctt tctgaaaaca gcccggaaaa agcacaagtc atcctcagac
841 gcacattcat ctcctggccc tgaaggctgt gggtctgacg cctcccagtt cgcagagtcc
901 cacagtgcta accttgatct ttcagggctt gaacctattc tggtagaatc agactcatcc
961 tctggtgggg aactagaggc tggggagtta gtgatagatg attcttaccg agaaatcaag
1021 aagaaaaaga agtcaaagaa gagcaaaaag aagaaagaca aggagaagca taaagagaag
1081 cgacactcca agtccaagag aagtttagga ctttctgccg tgccagtggg agaggtcaca
1141 gtgacatctg gccctcctcc cagcatccca tacgctggag cagcagcacc tcccctgcca
1201 cttcctggcc tccacacaga tgggcatagt gaaaaaaaaa aaaaaaaaga aaa
//