LOCUS BC025273 1598 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens glycerophosphodiester phosphodiesterase 1, mRNA (cDNA
clone MGC:39178 IMAGE:5427491), complete cds.
ACCESSION BC025273
VERSION BC025273.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1598)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1598)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: n Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39753954.
FEATURES Location/Qualifiers
source 1..1598
/db_xref="H-InvDB:HIT000039875"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39178 IMAGE:5427491"
/tissue_type="Brain, astrocytoma, grade IV"
/clone_lib="NIH_MGC_98"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..1598
/gene="GDE1"
/gene_synonym="363E6.2"
/gene_synonym="MIR16"
/db_xref="GeneID:51573"
/db_xref="HGNC:HGNC:29644"
/db_xref="MIM:605943"
CDS 116..1111
/gene="GDE1"
/gene_synonym="363E6.2"
/gene_synonym="MIR16"
/codon_start=1
/product="glycerophosphodiester phosphodiesterase 1"
/protein_id="AAH25273.1"
/db_xref="GeneID:51573"
/db_xref="HGNC:HGNC:29644"
/db_xref="MIM:605943"
/translation="MWLWEDQGGLLGPFSFLLLVLLLVTRSPVNACLLTGSLFVLLRV
FSFEPVPSCRALQVLKPRDRISAIAHRGGSHDAPENTLAAIRQAAKNGATGVELDIEF
TSDGIPVLMHDNTVDRTTDGTGRLCDLTFEQIRKLNPAANHRLRNDFPDEKIPTLREA
VAECLNHNLTIFFDVKGHAHKATEALKKMYMEFPQLYNNSVVCSFLPEVIYKMRQTDR
DVITALTHRPWSLSHTGDGKPRYDTFWKHFIFVMMDILLDWSMHNILWYLCGISAFLM
QKDFVSPAYLKKWSAKGIQVVGWTVNTFDEKSYYESHLGSSYITDSMVEDCEPHF"
BASE COUNT 425 a 392 c 387 g 394 t
ORIGIN
1 ctcagagggt tcctgctgct gccggtgcct tggaccctcc ccctcgcttc tcgttctact
61 gccccaggag cccggcgggt ccgggactcc cgtccgtgcc ggtgcgggcg ccggcatgtg
121 gctgtgggag gaccagggcg gcctcctggg ccctttctcc ttcctgctgc tagtgctgct
181 gctggtgacg cggagcccgg tcaatgcctg cctcctcacc ggcagcctct tcgttctact
241 gcgcgtcttc agctttgagc cggtgccctc ttgcagggcc ctgcaggtgc tcaagccccg
301 ggaccgcatt tctgccatcg cccaccgtgg cggcagccac gacgcgcccg agaacacgct
361 ggcggccatt cggcaggcag ctaagaatgg agcaacaggc gtggagttgg acattgagtt
421 tacttctgac gggattcctg tcttaatgca cgataacaca gtagatagga cgactgatgg
481 gactgggcga ttgtgtgatt tgacatttga acaaattagg aagctgaatc ctgcagcaaa
541 ccacagactc aggaatgatt tccctgatga aaagatccct accctaaggg aagctgttgc
601 agagtgccta aaccataacc tcacaatctt ctttgatgtc aaaggccatg cacacaaggc
661 tactgaggct ctaaagaaaa tgtatatgga atttcctcaa ctgtataata atagtgtggt
721 ctgttctttc ttgccagaag ttatctacaa gatgagacaa acagatcggg atgtaataac
781 agcattaact cacagacctt ggagcctaag ccatacagga gatgggaaac cacgctatga
841 tactttctgg aaacatttta tatttgttat gatggacatt ttgctcgatt ggagcatgca
901 taatatcttg tggtacctgt gtggaatttc agctttcctc atgcaaaagg attttgtatc
961 cccggcctac ttgaagaagt ggtcagctaa aggaatccag gttgttggtt ggactgttaa
1021 tacctttgat gaaaagagtt actacgaatc ccatcttggt tccagctata tcactgacag
1081 catggtagaa gactgcgaac ctcacttcta gactttcacg gtgggacgaa acgggttcag
1141 aaactgccag gggcctcata cagggatatc aaaataccct ttgtgctagc ccaggccctg
1201 gggaatcagg tgactcacac aaatgcaata gttggtcact gcatttttac ctgaaccaaa
1261 gctaaacccg gtgttgccac catgcaccat ggcatgccag agttcaacac tgttgctctt
1321 gaaaatctgg gtctgaaaaa acgcacaaga gcccctgccc tgccctagct gaggcacaca
1381 gggagaccca gtgaggataa gcacagattg aattgtacaa tttgcagatg cagatgtaaa
1441 tgcatgggac atgcatgata actcagagtt gacattttaa aacttgccac acttatttca
1501 aatatttgta ctcagctatg ttaacatgta ctgtagacat caaacttgtg gccatactaa
1561 taaaattatt aaaaggaaaa aaaaaaaaaa aaaaaaaa
//