LOCUS BC024777 1456 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens small nuclear ribonucleoprotein polypeptide N, mRNA
(cDNA clone MGC:29886 IMAGE:3907606), complete cds.
ACCESSION BC024777
VERSION BC024777.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1456)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1456)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 42 Row: b Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 29540556.
FEATURES Location/Qualifiers
source 1..1456
/db_xref="H-InvDB:HIT000050889"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29886 IMAGE:3907606"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1456
/gene="SNRPN"
/gene_synonym="HCERN3"
/gene_synonym="RT-LI"
/gene_synonym="SM-D"
/gene_synonym="SMN"
/gene_synonym="SNRNP-N"
/gene_synonym="SNURF-SNRPN"
/db_xref="GeneID:6638"
/db_xref="HGNC:HGNC:11164"
/db_xref="MIM:182279"
CDS 589..1311
/gene="SNRPN"
/gene_synonym="HCERN3"
/gene_synonym="RT-LI"
/gene_synonym="SM-D"
/gene_synonym="SMN"
/gene_synonym="SNRNP-N"
/gene_synonym="SNURF-SNRPN"
/codon_start=1
/product="SNRPN protein"
/protein_id="AAH24777.1"
/db_xref="GeneID:6638"
/db_xref="HGNC:HGNC:11164"
/db_xref="MIM:182279"
/translation="MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCD
CDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG
GPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATAS
IAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPP
GMRPPPPGIRGPPPPGMRPPRP"
BASE COUNT 363 a 372 c 384 g 337 t
ORIGIN
1 ctgctgtttc ggagtttcag ccgtaccctc tttagggtgc agtggtaagg agaggaagcc
61 ggccaaggag acagggtctg gctatgttgc ccaggttgga gtgcagtgat gcagttatag
121 ctccctgtaa cctcaaactc ctggatcaat ctagactcct gcctcagcct cccaagtgcc
181 tgttagtaca ggcttgaggg atcgcttaca cctgagacga actacagaac agcacgtacc
241 agaggtggaa gtccaagtca aacgcagaag gactgcctca ctgagcaacc aagagtgtca
301 gttgtacccg aggcgttctc agcagcagca agtacctgtg gtggatttcc aggctgaact
361 gaggcaggca ttcttagctg agacaccaag aggtggttaa agccatattg gagtagcgag
421 gaatctgatt ccaagcaaaa accaggctcc atctactctt tgaagcttct gcccagcttg
481 cattgtttct aggagaacct gcgtcatacc tttatctata gccttcccct aggtcttcag
541 aagcatcaag ttttaactgt ggacattgga tttggtggaa cagcaatcat gactgttggc
601 aagagtagca agatgctgca gcacattgac tatagaatga gatgtatcct gcaagatggc
661 cgaatcttca ttggcacctt taaggctttt gacaagcata tgaatttgat cctctgtgat
721 tgtgatgagt tcagaaagat caagccaaag aatgcgaagc aaccagagcg tgaagaaaag
781 cgggttttgg gtctggtgtt gctgcgtggg gagaacttgg tatccatgac tgtggagggg
841 ccacccccca aagatactgg cattgctcgg gtaccacttg ctggagctgc tggaggccct
901 ggggttggta gggcagctgg tagaggagta ccagctggtg tgccaattcc ccaggcccct
961 gctggattgg caggccctgt ccgaggagtt gggggaccat cccagcaggt aatgactcca
1021 cagggaagag gcactgtagc agctgctgct gttgctgcga ctgccagtat tgctggagcc
1081 ccaacacagt acccaccagg acggggcact ccgcccccac ccgtcggcag agcaacccca
1141 cctccaggca ttatggctcc tccacctggt atgagaccac ccatgggccc accaattggg
1201 cttccccctg ctcgagggac gccaataggc atgccgcctc cgggaatgag accccctcca
1261 ccaggcatta gaggtccacc tcccccagga atgcgtccac caagacctta gcatactgtt
1321 gatccatctc agtcactttt tcccctgcaa tgcgtcttgt gaaattgtgt agagtgtttg
1381 tgagcttttt gttccctcat tctgcattaa taatagctaa taataaatgc atagagcaat
1441 taaaaaaaaa aaaaaa
//