LOCUS BC024268 1526 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3G, mRNA (cDNA clone MGC:39116 IMAGE:4877863),
complete cds.
ACCESSION BC024268
VERSION BC024268.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1526)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1526)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: i Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13399303.
FEATURES Location/Qualifiers
source 1..1526
/db_xref="H-InvDB:HIT000039797"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39116 IMAGE:4877863"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1526
/gene="APOBEC3G"
/gene_synonym="ARP9"
/gene_synonym="bK150C2.7"
/gene_synonym="CEM15"
/gene_synonym="dJ494G10.1"
/gene_synonym="FLJ12740"
/gene_synonym="MDS019"
/db_xref="GeneID:60489"
/db_xref="HGNC:HGNC:17357"
/db_xref="MIM:607113"
CDS 43..1197
/gene="APOBEC3G"
/gene_synonym="ARP9"
/gene_synonym="bK150C2.7"
/gene_synonym="CEM15"
/gene_synonym="dJ494G10.1"
/gene_synonym="FLJ12740"
/gene_synonym="MDS019"
/codon_start=1
/product="apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3G"
/protein_id="AAH24268.1"
/db_xref="GeneID:60489"
/db_xref="HGNC:HGNC:17357"
/db_xref="MIM:607113"
/translation="MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGP
SRPPLDAKIFRGQVYSELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTR
DMATFLAEDPKVTLTIFVARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHC
WSKFVYSQRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHET
YLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQD
YRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAK
ISIMTYSEFKHCWDTFVDHQGCPFQPWDGLDEHSQDLSGRLRAILQNQEN"
BASE COUNT 445 a 371 c 358 g 352 t
ORIGIN
1 gtgctccaga caaagatctt agtcgggact agccggccaa ggatgaagcc tcacttcaga
61 aacacagtgg agcgaatgta tcgagacaca ttctcctaca acttttataa tagacccatc
121 ctttctcgtc ggaataccgt ctggctgtgc tacgaagtga aaacaaaggg tccctcaagg
181 ccccctttgg acgcaaagat ctttcgaggc caggtgtatt ccgaacttaa gtaccaccca
241 gagatgagat tcttccactg gttcagcaag tggaggaagc tgcatcgtga ccaggagtat
301 gaggtcacct ggtacatatc ctggagcccc tgcacaaagt gtacaaggga tatggccacg
361 ttcctggccg aggacccgaa ggttaccctg accatctttg ttgcccgcct ctactacttc
421 tgggacccag attaccagga ggcgcttcgc agcctgtgtc agaaaagaga cggtccgcgt
481 gccaccatga agatcatgaa ttatgacgaa tttcagcact gttggagcaa gttcgtgtac
541 agccaaagag agctatttga gccttggaat aatctgccta aatattatat attactgcac
601 atcatgctgg gggagattct cagacactcg atggatccac ccacattcac tttcaacttt
661 aacaatgaac cttgggtcag aggacggcat gagacttacc tgtgttatga ggtggagcgc
721 atgcacaatg acacctgggt cctgctgaac cagcgcaggg gctttctatg caaccaggct
781 ccacataaac acggtttcct tgaaggccgc catgcagagc tgtgcttcct ggacgtgatt
841 cccttttgga agctggacct ggaccaggac tacagggtta cctgcttcac ctcctggagc
901 ccctgcttca gctgtgccca ggaaatggct aaattcattt caaaaaacaa acacgtgagc
961 ctgtgcatct tcactgcccg catctatgat gatcaaggaa gatgtcagga ggggctgcgc
1021 accctggccg aggctggggc caaaatttca ataatgacat acagtgaatt taagcactgc
1081 tgggacacct ttgtggacca ccagggatgt cccttccagc cctgggatgg actagatgag
1141 cacagccaag acctgagtgg gaggctgcgg gccattctcc agaatcagga aaactgaagg
1201 atgggcctca gtctctaagg aaggcagaga cctgggttga gcctcagaat aaaagatctt
1261 cttccaagaa atgcaaacag gctgttcacc accatctcca gctgatcaca gacaccagca
1321 aagcaatgca ctcctgacca agtagattct tttaaaaatt agagtgcatt actttgaatc
1381 aaaaatttat ttatatttca agaataaagt actaagattg tgctcaatac acagaaaagt
1441 ttcaaaccta ctaatccagc gacaatttga atcggttttg taggtagagg aataaaatga
1501 aatactaaaa aaaaaaaaaa aaaaaa
//