LOCUS BC024194 1309 bp mRNA linear HUM 23-JUN-2006
DEFINITION Homo sapiens 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like
1, mRNA (cDNA clone MGC:33395 IMAGE:4818781), complete cds.
ACCESSION BC024194
VERSION BC024194.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1309)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1309)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC024194.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: g Column: 9.
FEATURES Location/Qualifiers
source 1..1309
/db_xref="H-InvDB:HIT000039763"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33395 IMAGE:4818781"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1309
/gene="HMGCLL1"
/gene_synonym="bA418P12.1"
/gene_synonym="DKFZP434G1411"
/db_xref="GeneID:54511"
/db_xref="HGNC:HGNC:21359"
CDS 41..1063
/gene="HMGCLL1"
/gene_synonym="bA418P12.1"
/gene_synonym="DKFZP434G1411"
/codon_start=1
/product="3-hydroxymethyl-3-methylglutaryl-Coenzyme A
lyase-like 1"
/protein_id="AAH24194.2"
/db_xref="GeneID:54511"
/db_xref="HGNC:HGNC:21359"
/translation="MGNVPSAVKHCLSYQQLLREHLWIGDSVAGALDPAQETSQLSGL
PEFVKIVEVGPRDGLQNEKVIVPTDIKIEFINRLSQTGLSVIEVTSFVSSRWVPQMAD
HTEVMKGIHQYPGVRYPVLTPNLQGFHHAVAAGATEISVFGAASESFSKKNINCSIEE
SMGKFEEVVKSARHMNIPARGYVSCALGCPYEGSITPQKVTEVSKRLYGMGCYEISLG
DTIGVGTPGSMKRMLESVMKEIPPGALAVHCHDTYGQALANILTALQMGINVVDSAVS
GLGGCPYAKGASGNVATEDLIYMLNGLGLNTGVNLYKVMEAGDFICKAVNKTTNSKVA
QASFNA"
BASE COUNT 399 a 253 c 308 g 349 t
ORIGIN
1 agtctccctc ccctcgccga ctgccgccac aggctccgcc atggggaatg tgccatccgc
61 ggtgaagcac tgcctcagct accagcagct tctccgggag catctctgga tcggggattc
121 agtggcaggg gcgctcgacc ccgcgcagga aacatcccag ttatctggac tccctgagtt
181 tgttaaaata gtagaagttg ggcctaggga tggattgcag aatgaaaagg ttatagttcc
241 tacagatata aaaattgaat ttatcaatcg actttcccaa actggcttgt ctgtaataga
301 agtgactagc tttgtgtctt ccagatgggt accacagatg gctgatcaca ctgaagtaat
361 gaaaggcatt catcaatatc caggagttcg ctatcctgtc cttactccta atcttcaggg
421 ttttcaccat gctgttgctg ctggagctac tgagatatca gtttttggag ctgcatctga
481 atcctttagc aagaagaata ttaactgttc cattgaagaa agtatgggaa aatttgagga
541 ggttgttaag tctgcaagac acatgaatat tccagcacga gggtatgtgt cttgtgctct
601 gggctgtcca tatgaaggaa gtattacacc gcaaaaagtg acagaagtgt ctaagagatt
661 gtacggcatg ggttgttatg agatctctct aggagacaca attggagtgg gaactccagg
721 aagtatgaaa agaatgttgg aaagtgtgat gaaagaaatc ccaccaggtg ctcttgctgt
781 tcactgtcat gacacatacg gacaagcctt agcaaatatc cttacggccc ttcagatggg
841 aattaatgtg gtggactccg cagtatccgg attaggtggc tgcccttatg caaaaggtgc
901 ttctgggaat gtagccactg aggatttgat atatatgctt aatggcctgg ggctcaatac
961 aggtgtgaat ctatacaaag tgatggaagc tggtgacttt atttgcaaag ctgtgaataa
1021 aaccacaaac tctaaagtag cacaagcctc cttcaatgct tgacttgaat ggatttatga
1081 cgtaccgttg agaagatcaa tttcagctac aatactcatc tgaaaatcat taatgccaac
1141 ttgctctgat atgtgaagta atggacaaga gtgggaaaaa agagatcctt ttcaaaaaga
1201 ttataactgg atagattaag tcaacaaaat gcaatatcag tcatcaggta aattgcaagc
1261 tgaggataaa taataaaact tgtcataatt ttgaaaaaaa aaaaaaaaa
//