LOCUS BC024002 1350 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens fibronectin type III domain containing 8, mRNA (cDNA
clone MGC:26228 IMAGE:4821771), complete cds.
ACCESSION BC024002
VERSION BC024002.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1350)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1350)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC024002.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: b Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62234418.
FEATURES Location/Qualifiers
source 1..1350
/db_xref="H-InvDB:HIT000039717"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26228 IMAGE:4821771"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1350
/gene="FNDC8"
/gene_synonym="DKFZp434H2215"
/db_xref="GeneID:54752"
/db_xref="HGNC:HGNC:25286"
CDS 64..1038
/gene="FNDC8"
/gene_synonym="DKFZp434H2215"
/codon_start=1
/product="fibronectin type III domain containing 8"
/protein_id="AAH24002.1"
/db_xref="GeneID:54752"
/db_xref="HGNC:HGNC:25286"
/translation="MASEALHQVGDGEEAVLKKENFNMMNALDQLPKPFPNPKSMNRT
VTTKGLPLASKGNLVNFLEDDTINLLKPLPVEDSDCSSDETSISAFSSTLLNPIKLAV
TQPNSSFFAGMLEGELNKLSFSPMAKNAENEDLALGPCPCPSKSQMATRGLLDLDNPE
LETETSSTHSESSVVVDLPDTPFIFEHTVNNSTAVISWTYALGKQPVSFYQLLLQEVA
KTQENELPEAKNRPWIFNKILGTTVKLMELKPNTCYCLSVRAANTAGVGKWCKPYKFA
TLATDFSSFPENYPIQITVRRKEPRQKIVSIGPEEMRRLEDLEYLFPC"
BASE COUNT 343 a 408 c 338 g 261 t
ORIGIN
1 ctctctgctt ctggtcagct gggttgtcct gcatggtgac gggtgtcatc ccgaacaaat
61 cagatggcat cagaggcact ccatcaagtg ggagatgggg aggaggctgt actgaagaaa
121 gaaaacttca acatgatgaa tgcccttgac caactgccaa aaccctttcc aaaccccaag
181 tctatgaacc ggaccgtcac taccaaagga ctcccactag cctcaaaggg caatttggtc
241 aacttcttgg aggatgatac catcaaccta ctgaagccgc tgccagtaga ggattcagac
301 tgcagctctg atgagaccag catctctgcc ttctcatcca ccttgctgaa ccccatcaaa
361 ttagctgtga cccagcccaa cagcagcttc tttgcaggga tgctggaggg ggagctgaac
421 aaactcagct tctccccaat ggccaagaat gcagaaaatg aggacctggc gctcggcccc
481 tgcccatgcc catcgaagtc ccagatggcc acaaggggcc tgctggacct tgacaaccct
541 gagctggaga cagaaacctc ctcaacgcac tcagaatctt ctgtggttgt ggacctgccg
601 gacaccccct tcatctttga gcacacagtc aacaattcca cagctgtgat ttcctggacc
661 tacgccttgg gcaagcagcc ggtcagtttc taccagctcc tgttacagga ggtggccaag
721 acacaggaga atgagttgcc cgaggcaaag aatcgtccat ggatcttcaa caagattttg
781 ggcactactg tcaagctgat ggagctaaag cctaacacgt gttactgcct cagtgtccgt
841 gcagccaaca cagctggggt ggggaagtgg tgcaagccct acaaatttgc aaccctggcc
901 actgacttca gcagctttcc tgagaactac cccatccaga tcaccgtgcg gcgcaaggaa
961 ccccggcaaa agatcgtgtc catcgggccg gaggagatgc ggaggctgga ggatctggaa
1021 tacctatttc cctgttaagg gggagggccc caggacaccc ctcacctact ttcagcttca
1081 accccaggcc ctcagaaacc agagccatga gacctaccat accaccagca ccctgcgggc
1141 ccggggtctg gcagagtggt atgggcaccc cacccctggg ctggggccaa ggctacatag
1201 gggccccatt cacctggagg catctcaggc caggccatgc caggctcagc cactgcccac
1261 agctgctaga ctccctcctc ctccaaatct gggctgggtc taggtccctc attaaagaac
1321 tgcaggtcat ccagcaaaaa aaaaaaaaaa
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