LOCUS BC023546 3458 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens LIM and calponin homology domains 1, mRNA (cDNA clone
MGC:16598 IMAGE:4110496), complete cds.
ACCESSION BC023546
VERSION BC023546.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3458)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3458)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC023546.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: b Column: 16.
FEATURES Location/Qualifiers
source 1..3458
/db_xref="H-InvDB:HIT000050819"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16598 IMAGE:4110496"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3458
/gene="LIMCH1"
/gene_synonym="LIMCH1A"
/gene_synonym="LMO7B"
/db_xref="GeneID:22998"
/db_xref="HGNC:HGNC:29191"
CDS 387..3080
/gene="LIMCH1"
/gene_synonym="LIMCH1A"
/gene_synonym="LMO7B"
/codon_start=1
/product="LIMCH1 protein"
/protein_id="AAH23546.1"
/db_xref="GeneID:22998"
/db_xref="HGNC:HGNC:29191"
/translation="MRKDTDDIESPKRSIRDSGYIDCWDSERSDSLSPPRHGRDDSFD
SLDSFGSRSRQTPSPDVVLRGSSDGRGSDSESDLPHRKLPDVKKDDMSARRTSHGEPK
SAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEYRKSWSTATSPLGGERPFRYGPRTPV
SDDAESTSMFDMRCEEEAAVQPHSRARQEQLQLINNQLREEDDKWQDDLARWKSRRRS
VSQDLIKKEEERKKMEKLLAGEDGTSERRKSIKTYREIVQEKERRERELHEAYKNARS
QEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNLSSFLNDPNPMKYLRQQS
LPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKNSQDVL
KTFKVDGKVSVNGETVHREEEKERECPTVAPAHSLTKSQMFEGVARVHGSPLELKQDN
GSIEINIKKPNSVPQELAATTEKTEPNSQEDKNDGGKSRKGNIELASSEPQHFTTTVT
RCSPTVAFVEFPSSPQLKNDVSEEKDQKKPENEMSGKVELVLSQKVVKPKSPEPEATL
TFPFLDKMPEANQLHLPNLNSQVDSPSSEKSPVTTPFKFWAWDPEEERRRQEKWQQEQ
ERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTVSSSSADQL
STSSSMTEGSGTMNKIDLGNCQDEKQDRRWKKSFQGDDSDLLLKTRESDRLEEKGSLT
EGALAHSGNPVSKGVHEDHQLDTEAGAPHCGTNPQLAQDPSQNQQTSNPTHSSEDVKP
KTLPLDKSINHQIESPSERRKSISGKKLCSSCGLPLGKGAAMIIETLNLYFHIQCFRC
GICKGQLGDAVSGTDVRIRNGLLNCNDCYMRSRSAGQPTTL"
BASE COUNT 1050 a 769 c 903 g 736 t
ORIGIN
1 agcctgcttg tggacagagc aggggttggc agtggtgacg actgttttgg gaaaggaaat
61 gtaagggcat ttcggctgct gtgctggggc tgacgaggag cacacaggag agatgcccct
121 cccatctccc agagtgggtt ggctggagtt cattgcggag catgaggacg tgtgggggac
181 aatattatct tattcttgag aggttgtaaa gagctcggcc ttaaagaatc tcaacttttt
241 gacccgagtg acctccagga tacatccaac agagtaacag tcaagtatta gttaccattt
301 actggctggg aaaagcagca aacagctgca catcctacag cggaacgaca ctaaacctga
361 aggagtttga aggattgttg gctcagatgc gaaaggacac tgatgacatt gaaagtccta
421 aacgcagtat ccgagacagt ggctacatcg actgctggga ttccgagcgc agcgactccc
481 tctctcctcc tcgccacggc agagatgatt ccttcgacag cctggattcc tttggctctc
541 gctctcggca gacgccttca ccagatgtag tcctcagggg aagcagcgat gggagaggaa
601 gcgactctga atccgacttg cctcatcgga agctgccaga tgtgaagaag gatgacatgt
661 ctgcacggcg gacttcccat ggtgagccga aatcagcagt gccttttaac cagtacctcc
721 cgaacaaaag caatcagacg gcctacgtcc ccgcgcctct gagaaagaag aaagcagaga
781 gagaggaata ccgcaagagc tggagtaccg ccacctcccc gctgggtggg gagaggccct
841 tcagatacgg tccgagaact cctgtgtctg atgacgcaga gagcaccagc atgtttgaca
901 tgcggtgtga ggaggaggcc gcggtgcagc cgcacagcag ggcccgccag gagcagctgc
961 agctgataaa taaccagctg agggaagagg acgacaaatg gcaagatgac ctggctcgtt
1021 ggaagagtcg tagaagaagt gtttctcagg acttaatcaa gaaagaggaa gaaaggaaaa
1081 aaatggagaa gttactggct ggagaagatg ggacaagtga acgaaggaaa agcatcaaaa
1141 cctacagaga aattgttcaa gaaaaagagc ggagagagag agagctgcat gaagcatata
1201 agaacgctcg gtcccaggag gaggcagagg ggatccttca acagtacatt gagaggttca
1261 ccatcagtga ggctgttctc gaacgcttgg agatgccaaa aattctggaa agaagccatt
1321 caacagagcc aaatttatcc tccttcctga atgaccccaa tcccatgaaa tacctgcggc
1381 aacagtcact gcctccaccc aaattcactg ccactgttga aaccaccatt gctcgtgcca
1441 gtgttctgga taccagcatg tcagcaggca gtgggtctcc aagcaaaact gtcactccca
1501 aagcagtgcc tatgctgaca cccaagcctt actcccagcc caaaaattct caagatgttc
1561 tgaagacctt taaggtagac gggaaagtca gtgtgaatgg agagacggtt catagagagg
1621 aggagaagga aagagagtgt cccacggtgg cacctgccca ctccttaacc aaatcccaga
1681 tgtttgaagg tgtggccaga gtgcacgggt ctccactgga gctgaaacaa gacaacggta
1741 gcatcgagat caacataaag aagccaaact ctgttcccca agagctcgca gcaaccactg
1801 agaaaacgga accgaatagt caagaggaca agaatgatgg tggaaaatca agaaaaggga
1861 atatagaact tgcctcatca gaaccacagc attttacaac aactgtgact cgatgcagcc
1921 cgaccgtggc ctttgtggaa tttccctcca gcccccagct gaagaatgat gtgtcggaag
1981 aaaaagacca gaagaaacca gaaaatgaaa tgagtggaaa ggtggagttg gtgctgtcac
2041 aaaaggtggt aaagccaaaa tctccagaac ccgaagcaac gctgacattt ccatttctgg
2101 acaaaatgcc tgaagccaac caactacatt tgccaaatct caattctcaa gtggattctc
2161 caagcagtga gaagtcacct gttacgacac cttttaagtt ctgggcatgg gacccagaag
2221 aggagcgcag gcgacaggaa aaatggcaac aggaacagga acgtttgctc caggagagat
2281 accagaagga gcaggacaag ctgaaagaag agtgggaaaa ggcccaaaag gaggtggaag
2341 aggaagaacg cagatactat gaggaggagc gtaagataat tgaagacact gtggttccat
2401 ttactgtttc ttcaagttcc gctgaccagc tgtctacctc ttcctccatg actgaaggca
2461 gtgggacaat gaataagata gacctgggaa actgtcaaga tgaaaaacaa gacagaagat
2521 ggaagaaatc attccaggga gatgacagtg acttattgct gaagactagg gaaagtgatc
2581 gactggagga gaagggcagc ctaactgaag gggccttggc tcattctggg aaccctgtat
2641 caaaaggagt ccatgaagac catcagctgg ataccgaggc tggggcccca cactgtggaa
2701 caaacccaca gcttgctcag gatccatccc agaatcagca gacatcaaat ccaacgcaca
2761 gttcagaaga tgtgaagcca aaaaccctcc cgctggataa aagcattaac catcagatcg
2821 agtctcccag tgaaaggcgg aagtctataa gtggaaagaa gctgtgctct tcctgtgggc
2881 ttcctttggg taaaggagct gcaatgatca tcgagaccct caatctctat tttcacatcc
2941 agtgtttcag gtgtggaatt tgtaaaggcc agcttggaga tgcagtgagt gggacggatg
3001 ttaggattcg aaatggtctc ctgaactgta atgattgcta catgcgatcc agaagtgccg
3061 ggcagcctac aacattgtga cacggctttc aagcttccgg atcactcacc atttctttac
3121 tgagagtgtc ccctggcaac tgcttaacaa aatcccaagc tcaggggctt ctcagcattt
3181 acctaatttc tgaaaggctc ttctgaaagg tggtatctgt tctttcgtag cacagtgttt
3241 atgtttttcc tgtttattgt tttggttttt tttttttttt tgcatttgca cagtatacac
3301 aaaagaatat ggggttgtaa tgatcctgaa tagctcaaaa aaggttttag catggtcaaa
3361 caggcttatg gtttaaaatg tgttattctc ttctttggga attagctaaa tgatgcaata
3421 aacctgtttt gttttagaaa aaaaaaaaaa aaaaaaaa
//