LOCUS BC022983 2808 bp mRNA linear HUM 09-DEC-2005
DEFINITION Homo sapiens ligand of numb-protein X 1, mRNA (cDNA clone MGC:29996
IMAGE:4995278), complete cds.
ACCESSION BC022983
VERSION BC022983.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2808)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2808)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 42 Row: k Column: 6.
FEATURES Location/Qualifiers
source 1..2808
/db_xref="H-InvDB:HIT000039687"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29996 IMAGE:4995278"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2808
/gene="LNX1"
/gene_synonym="MPDZ"
/gene_synonym="PDZRN2"
/db_xref="GeneID:84708"
/db_xref="HGNC:HGNC:6657"
/db_xref="IMGT/GENE-DB:6657"
/db_xref="MIM:609732"
CDS 162..2348
/gene="LNX1"
/gene_synonym="MPDZ"
/gene_synonym="PDZRN2"
/codon_start=1
/product="LNX1 protein"
/protein_id="AAH22983.1"
/db_xref="GeneID:84708"
/db_xref="HGNC:HGNC:6657"
/db_xref="IMGT/GENE-DB:6657"
/db_xref="MIM:609732"
/translation="MNQPESANDPEPLCAVCGQAHSLEENHFYSYPEEVDDDLICHIC
LQALLDPLDTPCGHTYCTLCLTNFLVEKDFCPMDRKPLVLQHCKKSSILVNKLLNKLL
VTCPFREHCTQVLQRCDLEHHFQTSCKGASHYGLTKDRKRRSQDGCPDGCASLTATAP
SPEVSAAATISLMTDEPGLDNPAYVSSAEDGQPAISPVDSGRSNRTRARPFERSTIRS
RSFKKINRALSVLRRTKSGSAVANHADQGRENSENTTAPEVFPRLYHLIPDGEITSIK
INRVDPSESLSIRLVGGSETPLVHIIIQHIYRDGVIARDGRLLPGDIILKVNGMDISN
VPHNYAVRLLRQPCQVLWLTVMREQKFRSRNNGQAPDAYRPRDDSFHVILNKSSPEEQ
LGIKLVRKVDEPGVFIFNVLDGGVAYRHGQLEENDRVLAINGHDLRYGSPESAAHLIQ
ASERRVHLVVSRQVRQRSPDIFQEAGWNSNGSWSPGPGERSNTPKPLHPTITCHEKVV
NIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVEL
TEVSRSEAVALLKRTSSSIVLKALEVKEYEPQEDCSSPAALDSNHNMAPPSDWSPSWV
MWLELPRCLYNCKDIVLRRNTAGSLGFCIVGGYEEYNGNKPFFIKSIVEGTPAYNDGR
IRCGDILLAVNGRSTSGMIHACLARLLKELKGRITLTIVSWPGTFL"
BASE COUNT 804 a 666 c 671 g 667 t
ORIGIN
1 gctcggttca cccacaagga atgagagctg cctgcctgct gctgcttgga gagccccaga
61 cagtcgcttg aagaggtgtg tggatgtctc ctagatcttg acttgctcct gaggaaatat
121 tgtgtgactg agtttcctgt tatactgctc tccaatccat catgaaccag ccagagtctg
181 ccaacgatcc tgaacccctg tgtgcagtgt gtggccaagc ccactccttg gaggaaaacc
241 acttctacag ctatccagag gaagtggatg atgacctcat ctgccacatc tgcctgcagg
301 ctttgctgga ccccctggac actccgtgtg gacacaccta ctgcaccctc tgcctcacca
361 acttcctggt ggagaaggac ttctgtccca tggaccgcaa gcctctggtt ctgcagcact
421 gcaagaagtc cagcatcctg gtcaacaaac tcctcaacaa gctactggtg acctgcccat
481 tcagggagca ctgcacccag gtgttgcagc gctgtgacct cgagcatcac tttcaaacca
541 gctgtaaagg tgcctcccac tacggcctga ccaaagatag gaagaggcgc tcacaagatg
601 gctgtccaga cggctgtgcg agcctcacag ccacggctcc ctccccagag gtttctgcag
661 ctgccaccat ctccttaatg acagacgagc ctggcctaga caaccctgcc tacgtgtcct
721 cggcagagga cgggcagcca gcaatcagcc cagtggactc tggccggagc aaccgaacta
781 gggcacggcc ctttgagaga tccactatta gaagcagatc atttaaaaaa ataaatcgag
841 ctttgagtgt tcttcgaagg acaaagagcg ggagtgcagt tgccaaccat gccgaccagg
901 gcagggaaaa ttctgaaaac accactgccc ctgaagtctt tccaaggttg taccacctga
961 ttccagatgg tgaaattacc agcatcaaga tcaatcgagt agatcccagt gaaagcctct
1021 ctattaggct ggtgggaggt agcgaaaccc cactggtcca tatcattatc caacacattt
1081 atcgtgatgg ggtgatcgcc agagacggcc ggctactgcc aggagacatc attctaaagg
1141 tcaacgggat ggacatcagc aatgtccctc acaactacgc tgtgcgtctc ctgcggcagc
1201 cctgccaggt gctgtggctg actgtgatgc gtgaacagaa gttccgcagc aggaacaatg
1261 gacaggcccc ggatgcctac agaccccgag atgacagctt tcatgtgatt ctcaacaaaa
1321 gtagccccga ggagcagctt ggaataaaac tggtgcgcaa ggtggatgag cctggggttt
1381 tcatcttcaa tgtgctggat ggcggtgtgg catatcgaca tggtcagctt gaggagaatg
1441 accgtgtgtt agccatcaat ggacatgatc ttcgatatgg cagcccagaa agtgcggctc
1501 atctgattca ggccagtgaa agacgtgttc acctcgtcgt gtcccgccag gttcggcagc
1561 ggagccctga catctttcag gaagccggct ggaacagcaa tggcagctgg tccccagggc
1621 caggggagag gagcaacact cccaagcccc tccatcctac aattacttgt catgagaagg
1681 tggtaaatat ccaaaaagac cccggtgaat ctctcggcat gaccgtcgca gggggagcat
1741 cacatagaga atgggatttg cctatctatg tcatcagtgt tgagcccgga ggagtcataa
1801 gcagagatgg aagaataaaa acaggtgaca ttttgttgaa tgtggatggg gtcgaactga
1861 cagaggtcag ccggagtgag gcagtggcat tattgaaaag aacatcatcc tcgatagtac
1921 tcaaagcttt ggaagtcaaa gagtatgagc cccaggaaga ctgcagcagc ccagcagccc
1981 tggactccaa ccacaacatg gccccaccca gtgactggtc cccatcctgg gtcatgtggc
2041 tggaattacc acggtgcttg tataactgta aagatattgt attacgaaga aacacagctg
2101 gaagtctggg cttctgcatt gtaggaggtt atgaagaata caatggaaac aaaccttttt
2161 tcatcaaatc cattgttgaa ggaacaccag catacaatga tggaagaatt agatgtggtg
2221 atattcttct tgctgtcaat ggtagaagta catcaggaat gatacatgct tgcttggcaa
2281 gactgctgaa agaacttaaa ggaagaatta ctctaactat tgtttcttgg cctggcactt
2341 ttttatagaa tcaatgatgg gtcagaggaa aacagaaaaa tcacaaatag gctaagaagt
2401 tgaaacacta tatttatctt gtcagttttt atatttaaag aaagaataca ttgtaaaaat
2461 gtcaggaaaa gtatgatcat ctaatgaaag ccagttacac ctcagaaaat atgattccaa
2521 aaaaattaaa actactagtt ttttttcagt gtggaggatt tctcattact ctacaacatt
2581 gtttatattt tttctattca ataaaaagcc ctaaaacaac taaaatgatt tgtatacccc
2641 actgaattca agctgattta aatttaaaat ttggtatatg ctgaagtctg ccaagggtac
2701 attatggcca tttttaattt acagctaaaa tattttttaa aatgcattgc tgagaaacgt
2761 tgctttcatc aaacaagaat aaatattttt cagaaaaaaa aaaaaaaa
//