LOCUS BC022551 2005 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens claudin domain containing 1, mRNA (cDNA clone
MGC:26832 IMAGE:4818672), complete cds.
ACCESSION BC022551
VERSION BC022551.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2005)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2005)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: o Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11096339.
FEATURES Location/Qualifiers
source 1..2005
/db_xref="H-InvDB:HIT000039624"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26832 IMAGE:4818672"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2005
/gene="CLDND1"
/gene_synonym="GENX-3745"
/gene_synonym="MGC111162"
/gene_synonym="MGC3316"
/gene_synonym="MGC9861"
/db_xref="GeneID:56650"
/db_xref="HGNC:HGNC:1322"
CDS 53..814
/gene="CLDND1"
/gene_synonym="GENX-3745"
/gene_synonym="MGC111162"
/gene_synonym="MGC3316"
/gene_synonym="MGC9861"
/codon_start=1
/product="claudin domain containing 1"
/protein_id="AAH22551.1"
/db_xref="GeneID:56650"
/db_xref="HGNC:HGNC:1322"
/translation="MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSS
DLNKSIWDEFISDEADEKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDV
VTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLC
ACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCL
ACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA"
BASE COUNT 595 a 379 c 363 g 668 t
ORIGIN
1 agggggtgaa gctggcggag caggaggatg ggcgagcagt ctgaatgcca gaatggataa
61 ccgttttgct acagcatttg taattgcttg tgtgctgagc ctcatttcca ccatctacat
121 ggcagcctcc attggcacag acttctggta tgaatatcga agtccagttc aagaaaattc
181 cagtgatttg aataaaagca tctgggatga attcattagt gatgaggcag atgaaaagac
241 ttataatgat gcactttttc gatacaatgg cacagtggga ttgtggagac ggtgtatcac
301 catacccaaa aacatgcatt ggtatagccc accagaaagg acagagtcat ttgatgtggt
361 cacaaaatgt gtgagtttca cactaactga gcagttcatg gagaaatttg ttgatcccgg
421 aaaccacaat agcgggattg atctccttag gacctatctt tggcgttgcc agttcctttt
481 accttttgtg agtttaggtt tgatgtgctt tggggctttg atcggacttt gtgcttgcat
541 ttgccgaagc ttatatccca ccattgccac gggcattctc catctccttg caggtctgtg
601 tacactgggc tcagtaagtt gttatgttgc tggaattgaa ctactccacc agaaactaga
661 gctccctgac aatgtatccg gtgaatttgg atggtccttc tgcctggctt gtgtctctgc
721 tcccttacag ttcatggctt ctgctctctt catctgggct gctcacacca accggaaaga
781 gtacacctta atgaaggcat atcgtgtggc atgagcaaga aactgcctgc tttacaattg
841 ccatttttat ttttttaaaa taatactgat attttcccca cctctcaatt gtttttaatt
901 tttatttgtg gatataccat tttattatga aaatctattt tatttataca cattcaccac
961 taaatacaca cttaatacca ctaaaattta tgtggtttac tttaagcgat gccatctttc
1021 aaataaacta atctaggtct agacagaaag aaatggatag agacttgaca caaatttatg
1081 aaagaaaatt gggagtagga atgtgaccga aaacaagttg tgctaatgtc tgttagactt
1141 ttcagtaaaa ctaaagtaac tgtatctgtt caactaaaaa ctctatatta gtttctttgg
1201 gaaacctctc atcgtcaaaa ctttatgttc actttgctgt tgtagatagc cagtcaacca
1261 gcagtattag tgctgttttc aaagatttaa gctctataaa attgggaaat tatctaagat
1321 cattttccct aagcattgac acatagcttc atctgaggtg agatatggca gctgtttgta
1381 tctgcactgt gtctgtctac aaaaagtgaa aaatacagtg tttacttgaa attttaactt
1441 tgtaactgca agaattccag ttcagccggg cgaggattag tattattttt aactctccgt
1501 aagattttca gtaccaccaa attgttttgg attttttttc tttcctcttc acataccagg
1561 gttattaaaa gtgtgctttc tttttacatt atattacagt tacaaggtaa aattcctcaa
1621 ctgctattta tttattccag cccagtacta taaagaacgt ttcaccataa tgaccctcca
1681 gagctgggaa acctaccaca agatctaaag ttctggctgt ccattaacct ccaactatgg
1741 tctttatttc ttgtggtaat atgatgtgcc tttccttgcc taaatccctt cctggtgtgt
1801 atcaacatta tttaatgtct tttaattcag tcattttttt ataagtatgt ctataaacat
1861 tgaacttaaa aaaacttatt tatttattcc actactgtag caattgacag attaaaaaaa
1921 tgtaacttca taatttctta ccataacctc aatgtctttt ttaaaaaata aaattaaaaa
1981 tgaaaagaga aaaaaaaaaa aaaaa
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