LOCUS BC022532 2443 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens prion protein, mRNA (cDNA clone MGC:26679
IMAGE:4813982), complete cds.
ACCESSION BC022532
VERSION BC022532.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2443)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2443)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: k Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..2443
/db_xref="H-InvDB:HIT000039610"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26679 IMAGE:4813982"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2443
/gene="PRNP"
/gene_synonym="ASCR"
/gene_synonym="CD230"
/gene_synonym="prion"
/gene_synonym="PrP"
/gene_synonym="PrP27-30"
/gene_synonym="PrP33-35C"
/gene_synonym="PrPc"
/db_xref="GeneID:5621"
/db_xref="HGNC:HGNC:9449"
/db_xref="MIM:176640"
CDS 61..822
/gene="PRNP"
/gene_synonym="ASCR"
/gene_synonym="CD230"
/gene_synonym="prion"
/gene_synonym="PrP"
/gene_synonym="PrP27-30"
/gene_synonym="PrP33-35C"
/gene_synonym="PrPc"
/codon_start=1
/product="prion protein"
/protein_id="AAH22532.1"
/db_xref="GeneID:5621"
/db_xref="HGNC:HGNC:9449"
/db_xref="MIM:176640"
/translation="MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSP
GGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKP
SKPKTNMKHMAGAAAAGAVVGGLGGYVLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQ
VYYRPMDEYSNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQY
ERESQAYYKRGSSMVLFSSPPVILLISFLIFLIVG"
BASE COUNT 683 a 502 c 583 g 675 t
ORIGIN
1 agtcgctgac agccgcggcg ccgcgagctt ctcctctcct cacgaccgag agcagtcatt
61 atggcgaacc ttggctgctg gatgctggtt ctctttgtgg ccacatggag tgacctgggc
121 ctctgcaaga agcgcccgaa gcctggagga tggaacactg ggggcagccg atacccgggg
181 cagggcagcc ctggaggcaa ccgctaccca cctcagggcg gtggtggctg ggggcagcct
241 catggtggtg gctgggggca gcctcatggt ggtggctggg ggcagcccca tggtggtggc
301 tggggacagc ctcatggtgg tggctggggt caaggaggtg gcacccacag tcagtggaac
361 aagccgagta agccaaaaac caacatgaag cacatggctg gtgctgcagc agctggggca
421 gtggtggggg gccttggcgg ctacgtgctg ggaagtgcca tgagcaggcc catcatacat
481 ttcggcagtg actatgagga ccgttactat cgtgaaaaca tgcaccgtta ccccaaccaa
541 gtgtactaca ggcccatgga tgagtacagc aaccagaaca actttgtgca cgactgcgtc
601 aatatcacaa tcaagcagca cacggtcacc acaaccacca agggggagaa cttcaccgag
661 accgacgtta agatgatgga gcgcgtggtt gagcagatgt gtatcaccca gtacgagagg
721 gaatctcagg cctattacaa gagaggatcg agcatggtcc tcttctcctc tccacctgtg
781 atcctcctga tctctttcct catcttcctg atagtgggat gaggaaggtc ttcctgtttt
841 caccatcttt ctaatctttt tccagcttga gggaggcggt atccacctgc agccctttta
901 gtggtggtgt ctcactcttt cttctctctt tgtcccggat aggctaatca atacccttgg
961 cactgatggg cactggaaaa catagagtag acctgagatg ctggtcaagc cccctttgat
1021 tgagttcatc atgagccgtt gctaatgcca ggccagtaaa agtataacag caaataacca
1081 ttggttaatc tggacttatt tttggactta gtgcaacagg ttgaggctaa aacaaatctc
1141 agaacagtct gaaatacctt tgcctggata cctctggctc cttcagcagc tagagctcag
1201 tatactaatg ccctatctta gtagagattt catagctatt tagagatatt ttccatttta
1261 agaaaacccg acaacatttc tgccaggttt gttaggaggc cacatgatac ttattcaaaa
1321 aaatcctaga gattcttagc tcttgggatg caggctcagc ccgctggagc atgagctctg
1381 tgtgtaccga gaactggggt gatgttttac ttttcacagt atgggctaca cagcagctgt
1441 tcaacaagag taaatattgt cacaacactg aacctctggc tagaggacat attcacagtg
1501 aacataactg taacatatat gaaaggcttc tgggacttga aatcaaatgt ttgggaatgg
1561 tgcccttgga ggcaacctcc cattttagat gtttaaagga ccctatatgt ggcattcctt
1621 tctttaaact ataggtaatt aaggcagctg aaaagtaaat tgccttctag acactgaagg
1681 caaatctcct ttgtccattt acctggaaac cagaatgatt ttgacataca ggagagctgc
1741 agttgtgaaa gcaccatcat catagaggat gatgtaatta aaaaatggtc agtgtgcaaa
1801 gaaaagaact gcttgcattt ctttatttct gtctcataat tgtcaaaaac cagaattagg
1861 tcaagttcat agtttctgta attggctttt gaatcaaaga atagggagac aatctaaaaa
1921 atatcttagg ttggagatga cagaaatatg attgatttga agtggaaaaa gaaattctgt
1981 taatgttaat taaagtaaaa ttattccctg gattgtttga tattgtcacc tagcagatat
2041 gtattacttt tctgcaatgt tattattggc ttgcactttg tgagtattct atgtaaaaat
2101 atatatgtat ataaaatata tattgcatag gacagactta ggagttttgt ttagagcagt
2161 taacatctga agtgtctaat gcattaactt ttgtaaggta ctgaatactt aatatgtggg
2221 aaaccctttt gcgtggtcct taggcttaca atgtgcactg aatcgtttca tgtaagaatc
2281 caaagtggac accattaaca ggtctttgaa atatgcatgt actttatatt ttctatattt
2341 gtaactttgc atgttcttgt tttgttatat aaaaaaattg taaatgttta atatctgact
2401 gaaattaaac gagcgaagat gagcaccaaa aaaaaaaaaa aaa
//