LOCUS BC022354 1080 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens proteasome (prosome, macropain) subunit, alpha type,
6, mRNA (cDNA clone MGC:23846 IMAGE:4292526), complete cds.
ACCESSION BC022354
VERSION BC022354.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1080)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1080)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 36 Row: b Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..1080
/db_xref="H-InvDB:HIT000039494"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23846 IMAGE:4292526"
/tissue_type="Skeletal Muscle"
/clone_lib="NIH_MGC_81"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1080
/gene="PSMA6"
/gene_synonym="IOTA"
/gene_synonym="MGC22756"
/gene_synonym="MGC2333"
/gene_synonym="MGC23846"
/gene_synonym="p27K"
/gene_synonym="PROS27"
/db_xref="GeneID:5687"
/db_xref="HGNC:HGNC:9535"
/db_xref="MIM:602855"
CDS 31..771
/gene="PSMA6"
/gene_synonym="IOTA"
/gene_synonym="MGC22756"
/gene_synonym="MGC2333"
/gene_synonym="MGC23846"
/gene_synonym="p27K"
/gene_synonym="PROS27"
/codon_start=1
/product="proteasome (prosome, macropain) subunit, alpha
type, 6"
/protein_id="AAH22354.1"
/db_xref="GeneID:5687"
/db_xref="HGNC:HGNC:9535"
/db_xref="MIM:602855"
/translation="MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRG
KDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWK
YKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY
CGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVG
VVTVENPKFRILTEAEIDAHLVALAERD"
BASE COUNT 432 a 183 c 214 g 251 t
ORIGIN
1 gattgtgttt aaagtagtgc ttgtaccaac atgtcccgtg gttccagcgc cggttttgac
61 cgccacatta ccattttttc acccgagggt cggctctacc aagtagaata tgcttttaag
121 gctattaacc agggtggcct tacatcagta gctgtcagag ggaaagactg tgcagtaatt
181 gtcacacaga agaaagtacc tgacaaatta ttggattcca gcacagtgac tcacttattc
241 aagataactg aaaacattgg ttgtgtgatg accggaatga cagctgacag cagatcccag
301 gtacagaggg cacgctatga ggcagctaac tggaaataca agtatggcta tgagattcct
361 gtggacatgc tgtgtaaaag aattgccgat atttctcagg tctacacaca gaatgctgaa
421 atgaggcctc ttggttgttg tatgatttta attggtatag atgaagagca aggccctcag
481 gtatataagt gtgatcctgc aggttactac tgtgggttta aagccactgc agcgggagtt
541 aaacaaactg agtcaaccag cttccttgaa aaaaaagtga agaagaaatt tgattggaca
601 tttgaacaga cagtggaaac tgcaattaca tgcctgtcta ctgttctatc aattgatttc
661 aaaccttcag aaatagaagt tggagtagtg acagttgaaa atcctaaatt caggattctt
721 acagaagcag agattgatgc tcaccttgtt gctctagcag agagagacta aacattgtcg
781 ttagtttacc agatccgtga tgccacttac ctgtgtgttt ggtaacaaca aaccaacatc
841 atggaggtcc ctggattgaa aaaggagcct ctcccactcc tcctaccacc gaagtggtta
901 ggactctata taaataaaaa caaggctttt ggaaaaaaaa aaaaaaaaaa aaaaaaaaaa
961 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1021 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//