LOCUS BC022318 1301 bp mRNA linear HUM 29-AUG-2008
DEFINITION Homo sapiens surfactant protein D, mRNA (cDNA clone MGC:22626
IMAGE:4696173), complete cds.
ACCESSION BC022318
VERSION BC022318.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1301)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1301)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 36 Row: n Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 61699225.
FEATURES Location/Qualifiers
source 1..1301
/db_xref="H-InvDB:HIT000039466"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22626 IMAGE:4696173"
/tissue_type="Lung"
/clone_lib="NIH_MGC_77"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1301
/gene="SFTPD"
/gene_synonym="COLEC7"
/gene_synonym="PSP-D"
/gene_synonym="SP-D"
/db_xref="GeneID:6441"
/db_xref="HGNC:HGNC:10803"
/db_xref="MIM:178635"
CDS 45..1172
/gene="SFTPD"
/gene_synonym="COLEC7"
/gene_synonym="PSP-D"
/gene_synonym="SP-D"
/codon_start=1
/product="surfactant protein D"
/protein_id="AAH22318.1"
/db_xref="GeneID:6441"
/db_xref="HGNC:HGNC:10803"
/db_xref="MIM:178635"
/translation="MLLFLLSALVLLTQPLGYLEAGMKTYSHRTMPSACTLVMCSSVE
SGLPGRDGRDGREGPRGEKGDPGLPGAAGQAGMPGQAGPVGPKGDNGSVGEPGPKGDT
GPSGPPGPPGVPGPAGREGPLGKQGNIGPQGKPGPKGEAGPKGEVGAPGMQGSAGARG
LAGPKGERGVPGERGVPGNTGAAGSAGAMGPQGSPGARGPPGLKGDKGIPGDKGAKGE
SGLPDVASLRQQVEALQGQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTE
AQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVY
SNWAPGKPNDDGGSEDCVEIFTNGKWNDRACGEKRLVVCEF"
BASE COUNT 333 a 321 c 421 g 226 t
ORIGIN
1 gagtttgctt ggagctcctg gggcctaaca aaaagaaacc tgccatgctg ctcttcctcc
61 tctctgcact ggtcctgctc acacagcccc tgggctacct ggaagcagga atgaagacct
121 actcccacag aacaatgccc agtgcttgca ccctggtcat gtgtagctca gtggagagtg
181 gcctgcctgg tcgcgatgga cgggatggga gagagggccc tcggggcgag aagggggacc
241 caggtttgcc aggagctgca gggcaagcag ggatgcctgg acaagctggc ccagttgggc
301 ccaaagggga caatggctct gttggagaac ctggaccaaa gggagacact gggccaagtg
361 gacctccagg acctcccggt gtgcctggtc cagctggaag agaaggtccc ctggggaagc
421 aggggaacat aggacctcag ggcaagccag gcccaaaagg agaagctggg cccaaaggag
481 aagtaggtgc cccaggcatg cagggctcgg caggggcaag aggcctcgca ggccctaagg
541 gagagcgagg tgtccctggt gagcgtggag tccctggaaa cacaggggca gcagggtctg
601 ctggagccat gggtccccag ggaagtccag gtgccagggg acccccggga ttgaaggggg
661 acaaaggcat tcctggagac aaaggagcaa agggagaaag tgggcttcca gatgttgctt
721 ctctgaggca gcaggttgag gccttacagg gacaagtaca gcacctccag gctgctttct
781 ctcagtataa gaaagttgag ctcttcccaa atggccaaag tgtcggggag aagattttca
841 agacagcagg ctttgtaaaa ccatttacgg aggcacagct gctgtgcaca caggctggtg
901 gacagttggc ctctccacgc tctgccgctg agaatgccgc cttgcaacag ctggtcgtag
961 ctaagaacga ggctgctttc ctgagcatga ctgattccaa gacagagggc aagttcacct
1021 accccacagg agagtccctg gtctattcca actgggcccc agggaagccc aacgatgatg
1081 gcgggtcaga ggactgtgtg gagatcttca ccaatggcaa gtggaatgac agggcttgtg
1141 gagaaaagcg tcttgtggtc tgcgagttct gagccaactg gggtgggtgg ggcagtgctt
1201 ggcccaggag tttggccaga agtcaaggct tagaccctca tgctgccaat atcctaataa
1261 aaaggtgacc ataaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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