LOCUS BC022015 1600 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens calponin 1, basic, smooth muscle, mRNA (cDNA clone
MGC:26510 IMAGE:4824832), complete cds.
ACCESSION BC022015
VERSION BC022015.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1600)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1600)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC022015.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: j Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56676373.
FEATURES Location/Qualifiers
source 1..1600
/db_xref="H-InvDB:HIT000039351"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26510 IMAGE:4824832"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1600
/gene="CNN1"
/gene_synonym="Sm-Calp"
/gene_synonym="SMCC"
/db_xref="GeneID:1264"
/db_xref="HGNC:HGNC:2155"
/db_xref="MIM:600806"
CDS 165..1058
/gene="CNN1"
/gene_synonym="Sm-Calp"
/gene_synonym="SMCC"
/codon_start=1
/product="calponin 1, basic, smooth muscle"
/protein_id="AAH22015.1"
/db_xref="GeneID:1264"
/db_xref="HGNC:HGNC:2155"
/db_xref="MIM:600806"
/translation="MSSAHFNRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGR
RIGNNFMDGLKDGIILCEFINKLQPGSVKKINESTQNWHQLENIGNFIKAITKYGVKP
HDIFEANDLFENTNHTQVQSTLLALASMAKTKGNKVNVGVKYAEKQERKFEPGKLREG
RNIIGLQMGTNKFASQQGMTAYGTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAG
MTAPGTKRQIFEPGLGMEHCDTLNVSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLTP
EYPELGEPAHNHHAHNYYNSA"
BASE COUNT 397 a 495 c 451 g 257 t
ORIGIN
1 ggcaggcccc tacagccaat ggaacggccc tggaagagac ccgggtcgcc tccggagctt
61 caaaaacatg tgaggaggga agagtgtgca gacggaactt cagccgctgc ctctgttctc
121 agcgtcagtg ccgccactgc ccccgccaga gcccaccggc cagcatgtcc tctgctcact
181 tcaaccgagg ccctgcctac gggctgtcag ccgaggttaa gaacaagctg gcccagaagt
241 atgaccacca gcgggagcag gagctgagag agtggatcga gggggtgaca ggccgtcgca
301 tcggcaacaa cttcatggac ggcctcaaag atggcatcat tctttgcgaa ttcatcaata
361 agctgcagcc aggctccgtg aagaagatca atgagtcaac ccaaaattgg caccagctgg
421 agaacatcgg caacttcatc aaggccatca ccaagtatgg ggtgaagccc cacgacattt
481 ttgaggccaa cgacctgttt gagaacacca accatacaca ggtgcagtcc accctcctgg
541 ctttggccag catggcgaag acgaaaggaa acaaggtgaa cgtgggagtg aagtacgcag
601 agaagcagga gcggaaattc gagccgggga agctaagaga agggcggaac atcattgggc
661 tgcagatggg caccaacaag tttgccagcc agcagggcat gacggcctat ggcacccggc
721 gccacctcta cgaccccaag ctgggcacag accagcctct ggaccaggcg accatcagcc
781 tgcagatggg caccaacaaa ggagccagcc aggctggcat gactgcgcca gggaccaagc
841 ggcagatctt cgagccgggg ctgggcatgg agcactgcga cacgctcaat gtcagcctgc
901 agatgggcag caacaagggc gcctcgcagc ggggcatgac ggtgtatggg ctgccacgcc
961 aggtctacga ccccaagtac tgtctgactc ccgagtaccc agagctgggt gagcccgccc
1021 acaaccacca cgcacacaac tactacaatt ccgcctaggg ccacaaggcc ttccctgttt
1081 tccccccaag ggaggctgct gctgctcttg gctggaccca gccaggccca gccgaccccc
1141 tctccctgca tggcatcctc cagcccctgt agaactcaac ctctacaggg ttagagtttg
1201 gagagagcag actggcgggg ggcccattgg ggggaagggg accctccgct ctgtagtgct
1261 acagggtcca acatagagcc gggtgtcccc aacagcgccc aaaggacgca ctgagcaacg
1321 ctattccagc tgtcccccca ctccctcaca agtgggtacc cccaggacca gaagctcccc
1381 cagcaaagcc cccagagccc aggctcggcc tgccccccac cccattcccg cagtgggagc
1441 aaactgcatg cccagagacc cagcggacac acgcggtttg gtttgcagcg actggcatac
1501 tatgtggatg tgacagtggc gtttgtaatg agagcacttt cttttttttc tatttcactg
1561 gagcacaata aatggctgta aaatctcaaa aaaaaaaaaa
//