LOCUS BC022014 1575 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens Parkinson disease (autosomal recessive, juvenile) 2,
parkin, mRNA (cDNA clone MGC:26491 IMAGE:4824892), complete cds.
ACCESSION BC022014
VERSION BC022014.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1575)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1575)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC022014.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: j Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4758883.
FEATURES Location/Qualifiers
source 1..1575
/db_xref="H-InvDB:HIT000039350"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26491 IMAGE:4824892"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1575
/gene="PARK2"
/gene_synonym="AR-JP"
/gene_synonym="PDJ"
/gene_synonym="PRKN"
/db_xref="GeneID:5071"
/db_xref="MIM:602544"
CDS 99..1262
/gene="PARK2"
/gene_synonym="AR-JP"
/gene_synonym="PDJ"
/gene_synonym="PRKN"
/codon_start=1
/product="PARK2 protein"
/protein_id="AAH22014.1"
/db_xref="GeneID:5071"
/db_xref="MIM:602544"
/translation="MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVI
FAGKELRNDWTVQNCDLDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSL
TRVDLSSSVLPGDSVGLAVILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPG
KLRVQCSTCRQATLTLTQGPSCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTS
DKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQ
FVHDPQLGYSLPCVGTGDTVVLRGALGGFRRGVAGCPNSLIKELHHFRILGEEQYNRY
QQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGYGQRRTK"
BASE COUNT 411 a 373 c 440 g 351 t
ORIGIN
1 gggatttaac ccaggagagc cgctggtggg aggcgcggct ggcgccgctg cgcgcatggg
61 cctgttcctg gcccgcagcc gccacctacc cagtgaccat gatagtgttt gtcaggttca
121 actccagcca tggtttccca gtggaggtcg attctgacac cagcatcttc cagctcaagg
181 aggtggttgc taagcgacag ggggttccgg ctgaccagtt gcgtgtgatt ttcgcaggga
241 aggagctgag gaatgactgg actgtgcaga attgtgacct ggatcagcag agcattgttc
301 acattgtgca gagaccgtgg agaaaaggtc aagaaatgaa tgcaactgga ggcgacgacc
361 ccagaaacgc ggcgggaggc tgtgagcggg agccccagag cttgactcgg gtggacctca
421 gcagctcagt cctcccagga gactctgtgg ggctggctgt cattctgcac actgacagca
481 ggaaggactc accaccagct ggaagtccag caggtagatc aatctacaac agcttttatg
541 tgtattgtaa aggcccctgt caaagagtgc agccggggaa actcagggta cagtgcagca
601 cctgcaggca ggcaacgctc accttgaccc agggtccatc ttgctgggat gatgttttaa
661 ttccaaaccg gatgagtggt gaatgccaat ccccacactg ccctgggact agtgcagaat
721 ttttctttaa atgtggagca caccccacct ctgacaagga aacatcagta gctttgcacc
781 tgatcgcaac aaatagtcgg aacatcactt gcattacgtg cacagacgtc aggagccccg
841 tcctggtttt ccagtgcaac tcccgccacg tgatttgctt agactgtttc cacttatact
901 gtgtgacaag actcaatgat cggcagtttg ttcacgaccc tcaacttggc tactccctgc
961 cttgtgtggg aactggagac acagtggtgc ttagaggagc tctgggggga ttcaggagag
1021 gagtcgctgg ctgtcccaac tccttgatta aagagctcca tcacttcagg attctgggag
1081 aagagcagta caaccggtac cagcagtatg gtgcagagga gtgtgtcctg cagatggggg
1141 gcgtgttatg cccccgccct ggctgtggag cggggctgct gccggagcct gaccagagga
1201 aagtcacctg cgaagggggc aatggcctgg gctgtgggta tggacaacga agaacaaaat
1261 aagctgcctc agggagaagt gagtgcctca ttcaatacat cgttcaagga aaagtcattg
1321 gtagcaaagc tatagaagaa ttacagagtt ccagatgtgg aaaaagccct agacgtcatt
1381 aactccagtg attatcagga tgtggttcac agatttattg taagatgcct gtgaattcac
1441 ccgtgcttaa tttttttttc cctcaattat caagatagaa aaagtacaac tcttaccatg
1501 tgggtatgca agaaatgtta gctgttacaa aaaaaatcgc gtataaaaaa gttgaaaacc
1561 aaataaaaaa aaaaa
//