LOCUS BC021933 1432 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:32094
IMAGE:4872635), complete cds.
ACCESSION BC021933
VERSION BC021933.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1432)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1432)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: l Column: 7.
FEATURES Location/Qualifiers
source 1..1432
/db_xref="H-InvDB:HIT000039310"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:32094 IMAGE:4872635"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1432
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CALPAIN4"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CDPS"
/db_xref="GeneID:826"
/db_xref="HGNC:HGNC:1481"
/db_xref="MIM:114170"
CDS 40..846
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CALPAIN4"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CDPS"
/codon_start=1
/product="calpain, small subunit 1"
/protein_id="AAH21933.1"
/db_xref="GeneID:826"
/db_xref="HGNC:HGNC:1481"
/db_xref="MIM:114170"
/translation="MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGG
GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFR
RLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG
FEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYS
DESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMFS"
BASE COUNT 355 a 412 c 390 g 275 t
ORIGIN
1 ccagaactcc ggacgtgtgc ggcgcagtga gtcgcagcca tgttcctggt taactcgttc
61 ttgaagggcg gcggcggcgg cggcggggga ggcgggggcc tgggtggggg cctgggaaat
121 gtgcttggag gcctgatcag cggggccggg ggcggcggcg gcggcggcgg cggcggcggc
181 ggtggtggag gcggcggtgg cggtggaacg gccatgcgca tcctaggcgg agtcatcagc
241 gccatcagcg aggcggctgc gcagtacaac ccggagcccc cgcccccacg cacacattac
301 tccaacattg aggccaacga gagtgaggag gtccggcagt tccggagact ctttgcccag
361 ctggctggag atgacatgga ggtcagcgcc acagaactca tgaacattct caataaggtt
421 gtgacacgac accctgatct gaagactgat ggttttggca ttgacacatg tcgcagcatg
481 gtggccgtga tggatagcga caccacaggc aagctgggct ttgaggaatt caagtacttg
541 tggaacaaca tcaaaaggtg gcaggccata tacaaacagt tcgacactga ccgatcaggg
601 accatttgca gtagtgaact cccaggtgcc tttgaggcag cagggttcca cctgaatgag
661 catctctata acatgatcat ccgacgctac tcagatgaaa gtgggaacat ggattttgac
721 aacttcatca gctgcttggt caggctggac gccatgttcc gtgccttcaa atctcttgac
781 aaagatggca ctggacaaat ccaggtgaac atccaggagt ggctgcagct gactatgttt
841 tcctgaactg gagccccaga cccgccccct caccgccttg ctataggagt cacctggagc
901 ctcggtctct cccagggccg atcctgtctg cagtcacatc tttgtggggc ctgctgaccc
961 acaagctttt gttctctcag tacttgttac ccagcttctc aacatccagg gcccaatttg
1021 ccctgcctgg agttccccct ggctctagga cactctaaca agctctgtcc acgggtctcc
1081 ccattcccac caggccctgc acacacccac tccgtaacct ctcccctgta cctgtgccaa
1141 gcctagcact tgtgatgcct ccatgccccg agggccctct ctcagttctg ggaggatgac
1201 tccagtccct gcacgccctg gcacaccctt cacggttgct acccaggcgg ccaagctcca
1261 gaccgtgcca gacccaggtg ccccagtgcc tttgtctata ttctgctccc agcctgccag
1321 gcccaggagg aaataaacat gccccagttg ctgaaaaaaa aaaaaaaaaa aaaaaaaaaa
1381 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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