LOCUS BC021825 2072 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens interferon (alpha, beta and omega) receptor 1, mRNA
(cDNA clone MGC:24928 IMAGE:4932084), complete cds.
ACCESSION BC021825
VERSION BC021825.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2072)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2072)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (18-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: n Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46488931.
FEATURES Location/Qualifiers
source 1..2072
/db_xref="H-InvDB:HIT000039290"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:24928 IMAGE:4932084"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2072
/gene="IFNAR1"
/gene_synonym="AVP"
/gene_synonym="IFN-alpha-REC"
/gene_synonym="IFNBR"
/gene_synonym="IFRC"
/db_xref="GeneID:3454"
/db_xref="HGNC:HGNC:5432"
/db_xref="MIM:107450"
CDS 80..1753
/gene="IFNAR1"
/gene_synonym="AVP"
/gene_synonym="IFN-alpha-REC"
/gene_synonym="IFNBR"
/gene_synonym="IFRC"
/codon_start=1
/product="interferon (alpha, beta and omega) receptor 1"
/protein_id="AAH21825.1"
/db_xref="GeneID:3454"
/db_xref="HGNC:HGNC:5432"
/db_xref="MIM:107450"
/translation="MMVVLLGATTLVLVAVAPWVLSAAAGGKNLKSPQKVEVDIIDDN
FILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKL
RIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDG
LSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPV
HCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYK
WKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLP
PVFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKIIEKKTDVT
VPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGNTSKIWLIVGICIALFAL
PFVIYAAKVFLRCINYVFFPSLKPSSSIDEYFSEQPLKNLLLSTSEEQIEKCFIIENI
STIATVEETNQTDEDHKKYSSQTSQDSGNYSNEDESESKTSEELQQDFV"
BASE COUNT 692 a 395 c 419 g 566 t
ORIGIN
1 cttaggacgg ggcgatggcg gctgagagga gctgcgcgtg cgcgaacatg taactggtgg
61 gatctgcggc ggctcccaga tgatggtcgt cctcctgggc gcgacgaccc tagtgctcgt
121 cgccgtggcg ccatgggtgt tgtccgcagc cgcaggtgga aaaaatctaa aatctcctca
181 aaaagtagag gtcgacatca tagatgacaa ctttatcctg aggtggaaca ggagcgatga
241 gtctgtcggg aatgtgactt tttcattcga ttatcaaaaa actgggatgg ataattggat
301 aaaattgtct gggtgtcaga atattactag taccaaatgc aacttttctt cactcaagct
361 gaatgtttat gaagaaatta aattgcgtat aagagcagaa aaagaaaaca cttcttcatg
421 gtatgaggtt gactcattta caccatttcg caaagctcag attggtcctc cagaagtaca
481 tttagaagct gaagataagg caatagtgat acacatctct cctggaacaa aagatagtgt
541 tatgtgggct ttggatggtt taagctttac atatagctta gttatctgga aaaactcttc
601 aggtgtagaa gaaaggattg aaaatattta ttccagacat aaaatttata aactctcacc
661 agagactact tattgtctaa aagttaaagc agcactactt acgtcatgga aaattggtgt
721 ctatagtcca gtacattgta taaagaccac agttgaaaat gaactacctc caccagaaaa
781 tatagaagtc agtgtccaaa atcagaacta tgttcttaaa tgggattata catatgcaaa
841 catgaccttt caagttcagt ggctccacgc ctttttaaaa aggaatcctg gaaaccattt
901 gtataaatgg aaacaaatac ctgactgtga aaatgtcaaa actacccagt gtgtctttcc
961 tcaaaacgtt ttccaaaaag gaatttacct tctccgcgta caagcatctg atggaaataa
1021 cacatctttt tggtctgaag agataaagtt tgatactgaa atacaagctt tcctacttcc
1081 tccagtcttt aacattagat cccttagtga ttcattccat atctatatcg gtgctccaaa
1141 acagtctgga aacacgcctg tgatccagga ttatccactg atttatgaaa ttattttttg
1201 ggaaaacact tcaaatgctg agagaaaaat tatcgagaaa aaaactgatg ttacagttcc
1261 taatttgaaa ccactgactg tatattgtgt gaaagccaga gcacacacca tggatgaaaa
1321 gctgaataaa agcagtgttt ttagtgacgc tgtatgtgag aaaacaaaac caggaaatac
1381 ctctaaaatt tggcttatag ttggaatttg tattgcatta tttgctctcc cgtttgtcat
1441 ttatgctgcg aaagtcttct tgagatgcat caattatgtc ttctttccat cacttaaacc
1501 ttcttccagt atagatgagt atttctctga acagccattg aagaatcttc tgctttcaac
1561 ttctgaggaa caaatcgaaa aatgtttcat aattgaaaat ataagcacaa ttgctacagt
1621 agaagaaact aatcaaactg atgaagatca taaaaaatac agttcccaaa ctagccaaga
1681 ttcaggaaat tattctaatg aagatgaaag cgaaagtaaa acaagtgaag aactacagca
1741 ggactttgta tgaccagaaa tgaactgtgt caagtataag gtttttcagc aggagttaca
1801 ctgggagcct gaggtcctca ccttcctctc agtaactaca gagaggacgt ttccctgttt
1861 agggaaagaa aaaacatctt cagatcatag gtcctaaaaa tacgggcaag ctcttaacta
1921 tttaaaaatg aaattacagg cccgggcacg gtggctcaca cctgtaatcc cagcactttg
1981 ggaggctgag gcaggcagat catgaggtca agagatcgag accagcctgg ccaacgtggt
2041 gaaaccccat ctctactaaa aaaaaaaaaa aa
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