LOCUS BC021711 2665 bp mRNA linear HUM 28-JUL-2006
DEFINITION Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 4 (putative), mRNA (cDNA clone MGC:26594
IMAGE:4826920), complete cds.
ACCESSION BC021711
VERSION BC021711.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2665)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2665)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC021711.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: p Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 44888830.
FEATURES Location/Qualifiers
source 1..2665
/db_xref="H-InvDB:HIT000039261"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26594 IMAGE:4826920"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2665
/gene="APOBEC4"
/gene_synonym="MGC26594"
/db_xref="GeneID:403314"
/db_xref="HGNC:HGNC:32152"
/db_xref="MIM:609908"
CDS 273..1376
/gene="APOBEC4"
/gene_synonym="MGC26594"
/codon_start=1
/product="apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 4 (putative)"
/protein_id="AAH21711.1"
/db_xref="GeneID:403314"
/db_xref="HGNC:HGNC:32152"
/db_xref="MIM:609908"
/translation="MEPIYEEYLANHGTIVKPYYWLSFSLDCSNCPYHIRTGEEARVS
LTEFCQIFGFPYGTTFPQTKHLTFYELKTSSGSLVQKGHASSCTGNYIHPESMLFEMN
GYLDSAIYNNDSIRHIILYSNNSPCNEANHCCISKMYNFLITYPGITLSIYFSQLYHT
EMDFPASAWNREALRSLASLWPRVVLSPISGGIWHSVLHSFISGVSGSHVFQPILTGR
ALADRHNAYEINAITGVKPYFTDVLLQTKRNPNTKAQEALESYPLNNAFPGQFFQMPS
GQLQPNLPPDLRAPVVFVLVPLRDLPPMHMGQNPNKPRNIVRHLNMPQMSFQETKDLG
RLPTGRSVEIVEITEQFASSKEADEKKKKKGKK"
BASE COUNT 843 a 595 c 460 g 767 t
ORIGIN
1 agtgttctta gaggtagcca cacctcagca agggctttct aacttggaac agcaaagttc
61 aaatgaacga atagacacaa actgtgaaag agtcctgaac ccattacaag gtgaatcttt
121 acagcacaat tgccttctga agctacttga aacagggcat gggacttaaa ggagaaaaaa
181 aaggaaatgg accatctctt ctaacacctg gaatgtgatc caagcctgga gacaaattga
241 tggtttgcag ctagaagaca gtaaatctag caatggagcc catatatgag gagtacctag
301 caaatcatgg aacaatagta aaaccatatt actggctaag cttctctctc gattgctcta
361 attgtcctta ccatattcga acaggtgaag aagcaagagt ttccctcaca gaattttgtc
421 agatttttgg attcccttat gggacaacat ttcctcaaac aaaacacctc acattttatg
481 aactaaaaac ttcttctggt agcctggtgc aaaagggcca tgctagcagt tgcactggga
541 attatatcca tccagaatca atgctctttg aaatgaatgg ttatcttgac tcagccatat
601 acaataatga cagcatcagg catatcattc tgtattccaa caactcccct tgtaatgaag
661 ctaaccactg ctgcatcagc aaaatgtata atttcctgat tacgtatcca ggcatcactc
721 ttagtattta tttttctcag ctctatcata ctgagatgga ctttcctgcc tcagcatgga
781 accgcgaagc tctccggagc ctggccagct tatggccgcg ggttgttttg agtccaataa
841 gtggtgggat ctggcattct gttctccaca gctttataag tggtgtctca ggatcacatg
901 tttttcagcc cattttaact gggagagcac tggctgacag gcacaacgca tatgaaatca
961 atgccataac aggcgtaaaa ccttacttca ctgatgttct tctccagaca aaaaggaatc
1021 caaacacaaa agctcaggag gctttagaga gctacccctt aaacaatgcc tttcctggac
1081 agttttttca aatgccgagt ggacaactcc aacccaacct acctccagac ctcagggctc
1141 ctgttgtttt tgtgctagtg cctctcaggg acttaccacc aatgcatatg ggccaaaacc
1201 caaataaacc caggaatatc gtaaggcact taaatatgcc tcaaatgtca ttccaggaaa
1261 ccaaggacct tggaaggctt cccactggaa ggtcagtgga gatagtggaa atcacagaac
1321 agtttgcaag tagcaaggag gcagatgaaa agaagaagaa gaaagggaag aaataaaatc
1381 tacattccta cagcatgaaa ccaattacca agggacttat tagataggca ataaaaatct
1441 ggaaactttc tctctcaggg ctgagccaag atggagataa actgatgcac taaaagcaaa
1501 ccttgaatta tttaccatat caactattat aaagttacac tattttaaac ataatccaaa
1561 atgtttccat aagcaacttg atctctctcc tttattttga aagtggcagt atcaaaatgg
1621 aaccattagc agcttgctaa tattttgatg cagaaaagga atctcattat tctattttac
1681 tcacatcatc tttccactac aaaagcccat ggacaaaata gctacctaaa tttgtttcgg
1741 taaaaaattt actgtaaaat tgaaaaacag cctgaagcta ctgacattaa gtgctgtttg
1801 caggagcaaa ccagtgattt tctattaatt gttaatcatg gacagaagat tttaggcagc
1861 tcattttttt ctaaagtgat tcaaaatagt tttgtgtggg aaaaagctct tctgctgatt
1921 acatatagct ataaagatta aaacctagcc acctgctcag tttgatcttc cccagctcag
1981 acctctccct tctgagcaga tgatagaggt aagatgatac atgagaacct ccaatggctc
2041 ctgtcatcac atactgtata aaatccaagt tcctcttact ggctttcaag gatcctcctt
2101 taacttcctg ttgccttgtc tcatcagcaa gatcataagt acctacaggt caagcactgt
2161 ctctcccttc tctttagctt ttcccttagg atctagcaca ttacccagca aaatgtgagt
2221 agcaaggctg aaatgacatc tcaataactt caccaatgat tgtaactcag catcccttct
2281 ccatcccagc tgaaagcctg cttcaccatc ctgcaagaga tgttttttct ttttgttagc
2341 atccattccc ctttctaatg cagctcccaa tgcataatgt gtgttttact tccctctttc
2401 tgactccatc ctcgtcacca gtgaatattt gtaccttctc ttaaaatctt caaaacacac
2461 ttctaggaag tgctccttga ttaatcctct aagcacttaa atgaaagcac tttgcttatg
2521 cttatttcac atttgctgcc acttgcctct ttgaaatatg taaagataca ttacaagaaa
2581 aatgtacatt ttctcgtaac ttgctattaa tttttttctt tatatatata tataaagtaa
2641 tcctaagcca aaaaaaaaaa aaaaa
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