LOCUS BC020796 1374 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromatin modifying protein 5, mRNA (cDNA clone
MGC:23775 IMAGE:4134310), complete cds.
ACCESSION BC020796
VERSION BC020796.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1374)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1374)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 35 Row: a Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20127557.
FEATURES Location/Qualifiers
source 1..1374
/db_xref="H-InvDB:HIT000038966"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23775 IMAGE:4134310"
/tissue_type="Bone marrow, chronic myelogenous leukemia"
/clone_lib="NIH_MGC_54"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1374
/gene="CHMP5"
/gene_synonym="CGI-34"
/gene_synonym="HSPC177"
/gene_synonym="PNAS-2"
/db_xref="GeneID:51510"
/db_xref="HGNC:HGNC:26942"
CDS 32..691
/gene="CHMP5"
/gene_synonym="CGI-34"
/gene_synonym="HSPC177"
/gene_synonym="PNAS-2"
/codon_start=1
/product="chromatin modifying protein 5"
/protein_id="AAH20796.1"
/db_xref="GeneID:51510"
/db_xref="HGNC:HGNC:26942"
/translation="MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVK
YKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDT
KTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTPELDE
DDLEAELDALGDELLADEDSSYLDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIPA
S"
BASE COUNT 452 a 218 c 292 g 412 t
ORIGIN
1 gagtgtttgg gtttcttcgc ggctgctcaa gatgaaccga ctcttcggga aagcgaaacc
61 caaggctccg ccgcccagcc tgactgactg cattggcacg gtggacagta gagcagaatc
121 cattgacaag aagatttctc gattggatgc tgagctagtg aagtataagg atcagatcaa
181 gaagatgaga gagggtcctg caaagaatat ggtcaagcag aaagccttgc gagttttaaa
241 gcaaaagagg atgtatgagc agcagcggga caatcttgcc caacagtcat tcaacatgga
301 acaagccaat tataccatcc agtctttgaa ggacaccaag accacggttg atgctatgaa
361 actgggagta aaggaaatga agaaggcata caagcaagtg aagatcgacc agattgagga
421 tttacaagac cagctagagg atatgatgga agatgcaaat gaaatccaag aagcactgag
481 tcgcagttat ggcaccccag aactggatga agatgattta gaagcagagt tggatgcact
541 aggtgatgag cttctggctg atgaagacag ttcttatttg gatgaggcag catctgcacc
601 tgcaattcca gaaggtgttc ccactgatac aaaaaacaag gatggagttc tggtggatga
661 atttggattg ccacagatcc ctgcttcata gatttgcatc attcaagcat atcttgtaaa
721 acaaacacat attatgggac taggaaatat ttatctttcc aaatttgcca taacagattt
781 aggtttcttt cctttctttg aaggaaagtt taattacatt gctcttttat tttttccatt
841 aagagactca ttgcttggga aatgctttct tcgtactaaa atttgattcc tttttttctt
901 atgaaaaacg aactcagttt aaaagtattt ttagctcgta tgacttgttt tcattcatta
961 ataataattt gaaataaaac taaggaaatg gaatcttaaa agtctatgac agtgtaactc
1021 tacagtctca aaatgacctg ataaattgat aagacaaaga tgagattatt ggggctgttc
1081 atattatgat tcagaatcat tttctattgt ggtattatag gttggttaaa gtgatggcct
1141 ttttgatggg ttttgttgtg tcttgtgaac aagtcgttac tgtgtccatt attggaatgg
1201 aattatcact actgtatcat gagtgggtat tttgattcta tggttccctc agtattacat
1261 cttgacttgt aatcaattat gaatatttct tgatatttaa tgtataggac atttatttat
1321 actcaataaa tatttttcaa aaggaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
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