LOCUS BC020792 1518 bp mRNA linear HUM 02-DEC-2006
DEFINITION Homo sapiens homogentisate 1,2-dioxygenase (homogentisate oxidase),
mRNA (cDNA clone MGC:23690 IMAGE:4716316), complete cds.
ACCESSION BC020792
VERSION BC020792.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1518)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1518)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: d Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504380.
FEATURES Location/Qualifiers
source 1..1518
/db_xref="H-InvDB:HIT000038963_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23690 IMAGE:4716316"
/tissue_type="Liver"
/clone_lib="NIH_MGC_76"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1518
/gene="HGD"
/gene_synonym="HGO"
/db_xref="GeneID:3081"
/db_xref="HGNC:HGNC:4892"
/db_xref="MIM:607474"
CDS 167..1156
/gene="HGD"
/gene_synonym="HGO"
/codon_start=1
/product="homogentisate 1,2-dioxygenase (homogentisate
oxidase)"
/protein_id="AAH20792.1"
/db_xref="GeneID:3081"
/db_xref="HGNC:HGNC:4892"
/db_xref="MIM:607474"
/translation="MAELKYISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQL
SGSAFTCPRSTNKRSWLYRILPSVSHKPFESIDEGHVTHNWDEVDPDPNQLRWKPFEI
PKASQKKVDFVSGLHTLCGAGDIKSNNGLAIHIFLCNTSMENRCFYNSDGDFLIVPQK
GNLLIYTEFGKMLVQPNEICVIQRGMRFSIDVFEETRGYILEVYGVHFELPDLGPIGA
NGLANPRDFLIPIAWYEDRQVPGGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYK
YNLKNFMVINSVAFDHADPSIFTVLTALRRPARSSWHLRGLPMAPWHLCLNHL"
BASE COUNT 432 a 328 c 358 g 400 t
ORIGIN
1 agacaattct ttcagctagt ttgagtgacg cactgaccag tgaagcgcag tgaagcagtg
61 ggaaccggaa tatccaaaga gtggtttgaa ggagaaagaa gcattgtggc tttatatcct
121 ctgggcctgg gtttcctgaa gtcaccacac atagaggaga gagaaaatgg ctgagttaaa
181 gtacatttct ggatttggga atgagtgttc ttcagaggat cctcgctgcc caggttccct
241 gccagaagga cagaataatc ctcaggtctg cccctacaat ctctatgctg agcagctctc
301 aggatcggct ttcacttgtc cacggagcac caataagaga agctggctgt ataggattct
361 accttcagtt tctcacaagc cctttgaatc cattgacgaa ggccatgtca ctcacaactg
421 ggatgaagtt gatcctgatc ctaaccagct tagatggaaa ccatttgaga ttccaaaagc
481 atctcagaag aaagtagact ttgtgagtgg cctgcatacc ttgtgtggag ctggagacat
541 aaagtctaac aatgggcttg ctatccacat tttcctctgc aatacctcca tggagaacag
601 atgcttttac aattcagatg gggacttctt gattgttccg cagaaaggga accttctcat
661 ttacaccgag tttggcaaga tgcttgtaca gcccaatgag atctgcgtca ttcagagagg
721 aatgcggttc agcatagatg tctttgagga gaccaggggc tacatcttgg aggtctatgg
781 tgtccacttt gagttacctg accttggacc aattggggcc aatggcttgg ccaatcctcg
841 tgatttcttg atacccattg cctggtatga ggatcgccaa gtaccaggtg gttacacggt
901 cattaataaa taccagggca agctgtttgc tgccaaacag gatgtctccc cgttcaatgt
961 tgtggcctgg cacgggaatt atacacccta caagtacaac ctgaagaatt tcatggttat
1021 caactcagtg gcctttgacc atgcagaccc atccattttc acagtattga ctgctttgag
1081 aaggccagca aggtcaagct ggcacctgag aggattgccg atggcaccat ggcatttatg
1141 tttgaatcat ctttaagtct ggcggtcaca aagtggggac tcaaggcctc caggtgtttg
1201 gatgagaact accacaagtg ctgggagcca ctcaagagcc acttcactcc caactccagg
1261 aacccagcag aacctaattg agactggaac attgctacca taattaagag tagatttgtg
1321 aagatttctt cagaatctca tgctttctgg tagtattgga ggagggggtt ggttaaaatg
1381 aaaattcact tttcatagtc aagtaactca gaacttttat ggaaacgcat ttgcaaagtt
1441 ctatggctgt caccttaatt actcaataaa cttgctggtg ttctgtgcaa aaaaaaaaaa
1501 aaaaaaaaaa aaaaaaaa
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