LOCUS BC020780 1704 bp mRNA linear HUM 06-MAR-2007
DEFINITION Homo sapiens recombination signal binding protein for
immunoglobulin kappa J region, mRNA (cDNA clone MGC:22780
IMAGE:4718839), complete cds.
ACCESSION BC020780
VERSION BC020780.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1704)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1704)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: e Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42560226.
FEATURES Location/Qualifiers
source 1..1704
/db_xref="H-InvDB:HIT000090242"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22780 IMAGE:4718839"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_61"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1704
/gene="RBPJ"
/gene_synonym="CBF1"
/gene_synonym="csl"
/gene_synonym="IGKJRB"
/gene_synonym="KBF2"
/gene_synonym="RBP-J"
/gene_synonym="RBPJK"
/gene_synonym="SUH"
/db_xref="GeneID:3516"
/db_xref="HGNC:HGNC:5724"
/db_xref="MIM:147183"
CDS 166..1623
/gene="RBPJ"
/gene_synonym="CBF1"
/gene_synonym="csl"
/gene_synonym="IGKJRB"
/gene_synonym="KBF2"
/gene_synonym="RBP-J"
/gene_synonym="RBPJK"
/gene_synonym="SUH"
/codon_start=1
/product="recombination signal binding protein for
immunoglobulin kappa J region"
/protein_id="AAH20780.1"
/db_xref="GeneID:3516"
/db_xref="HGNC:HGNC:5724"
/db_xref="MIM:147183"
/translation="MGGCRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKS
YGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL
EGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLK
NADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGE
EFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLK
DTERMYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLA
PVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPD
ISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANS
SQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS"
BASE COUNT 535 a 351 c 410 g 408 t
ORIGIN
1 attgggtaca tgcgcagtgc cgctcgcgcg ggccgcgcca atcctgcagc gccttcaaca
61 ggtttcgggc ggcgaattcc agttctccgg gttttggggc tccctgcggg aggcagtgct
121 ggatctggga atctctagga aaggaaagag caaaggaggg gaaagatggg gggctgcagg
181 aaatttggtg agcggcctcc acctaaacga cttactaggg aagctatgcg aaattattta
241 aaagagcgag gggatcaaac agtacttatt cttcatgcaa aagttgcaca gaagtcatat
301 ggaaatgaaa aaaggttttt ttgcccacct ccttgtgtat atcttatggg cagcggatgg
361 aagaaaaaaa aagaacaaat ggaacgcgat ggttgttctg aacaagagtc tcaaccgtgt
421 gcatttattg ggataggaaa tagtgaccaa gaaatgcagc agctaaactt ggaaggaaag
481 aactattgca cagccaaaac attgtatata tctgactcag acaagcgaaa gcacttcatg
541 ttgtctgtaa agatgttcta tggcaacagt gatgacattg gtgtgttcct cagcaagcgg
601 ataaaagtca tctccaaacc ttccaaaaag aagcagtcat tgaaaaatgc tgacttatgc
661 attgcctcag gaacaaaggt ggctctgttt aatcgactac gatcccagac agttagtacc
721 agatacttgc atgtagaagg aggtaatttt catgccagtt cacagcagtg gggagccttt
781 tttattcatc tcttggatga tgatgaatca gaaggagaag aattcacagt ccgagatggc
841 tacatccatt atggacaaac agtcaaactt gtgtgctcag ttactggcat ggcactccca
901 agattgataa ttaggaaagt tgataagcag accgcattat tggatgcaga tgatcctgtg
961 tcacaactcc ataaatgtgc attttacctt aaggatacag aaagaatgta tttgtgcctt
1021 tctcaagaaa gaataattca atttcaggcc actccatgtc caaaagaacc aaataaagag
1081 atgataaatg atggcgcttc ctggacaatc attagcacag ataaggcaga gtatacattt
1141 tatgagggaa tgggccctgt ccttgcccca gtcactcctg tgcctgtggt agagagcctt
1201 cagttgaatg gcggtgggga cgtagcaatg cttgaactta caggacagaa tttcactcca
1261 aatttacgag tgtggtttgg ggatgtagaa gctgaaacta tgtacaggtg tggagagagt
1321 atgctctgtg tcgtcccaga catttctgca ttccgagaag gttggagatg ggtccggcaa
1381 ccagtccagg ttccagtaac tttggtccga aatgatggaa tcatttattc caccagcctt
1441 acctttacct acacaccaga accagggccg cggccacatt gcagtgcagc aggagcaatc
1501 cttcgagcca attcaagcca ggtgccccct aacgaatcaa acacaaacag cgagggaagt
1561 tacacaaacg ccagcacaaa ttcaaccagt gtcacatcat ctacagccac agtggtatcc
1621 taactaccgt ctttttgcta ggacttaaac tgacttgagt gtggcaaaaa gttaacaaaa
1681 aaaaaaaaaa aaaaaaaaaa aaaa
//