LOCUS BC020778 1617 bp mRNA linear HUM 16-JUN-2008
DEFINITION Homo sapiens leucine-rich repeats and IQ motif containing 3, mRNA
(cDNA clone IMAGE:4697893), complete cds.
ACCESSION BC020778
VERSION BC020778.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1617)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1617)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 36 Row: o Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21687083
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1617
/db_xref="H-InvDB:HIT000038953"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4697893"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_61"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1617
/gene="LRRIQ3"
/db_xref="GeneID:127255"
/db_xref="HGNC:HGNC:28318"
CDS 153..752
/gene="LRRIQ3"
/codon_start=1
/product="leucine-rich repeats and IQ motif containing 3"
/protein_id="AAH20778.1"
/db_xref="GeneID:127255"
/db_xref="HGNC:HGNC:28318"
/translation="MFHGTVTEELTSHEEWSHYNENIREGQKDFVFVKFNGLHLKSME
NLQSCISLRVCIFSNNFITDIHPLQSCIKLIKLDLHGNQIKSLPNTKFWNGLKNLKLL
YLHDNGFAKLKNICVLSACPTLIALTMFDCPVSLKKGYRHVLVNSIWPLKALDHHVIS
DEEIIQNWHLPERFKACNHRLFFNFCPALRKEKMKHSEV"
BASE COUNT 584 a 244 c 327 g 462 t
ORIGIN
1 gcccggaaaa ccatgatctg gagaacttgg atgttgtctt gtttctctag caacggtctc
61 aggagcagat ggccgcccag cgatttgtct gactgtgttg gggctgggcc acttgtctcc
121 aattcataag ggcttgcagc ccagttgacc cgatgtttca tggaacagtc acagaagagc
181 taaccagtca tgaagaatgg agtcactata atgaaaacat aagagaaggt caaaaagatt
241 ttgtttttgt gaagttcaat ggccttcatt taaagtctat ggaaaatttg cagtcttgca
301 tctctcttag agtatgcatc ttctcaaaca attttattac agatattcat ccacttcaaa
361 gttgtataaa attaatcaaa cttgatctcc atggaaatca gataaagagt ctaccaaata
421 ccaaattttg gaatggattg aagaacctaa aactactcta tcttcatgac aatgggtttg
481 caaagttaaa gaatatatgt gtattatctg cctgtccaac cctcattgcc ctcactatgt
541 ttgattgtcc agtaagcctt aaaaaaggat atagacatgt tcttgttaac agtatatggc
601 ctctcaaagc gctggatcat catgtgattt ctgatgaaga aataattcag aactggcatc
661 ttcctgaaag attcaaagca tgtaaccatc gacttttctt taatttctgc ccagctttga
721 gaaaggagaa aatgaagcat agtgaggttt aggaacttac ccaatattgg acagcaaatg
781 agtcatgagg tgggatttca acaagtctgc agtcaacatt gcatcacaaa tgacagacag
841 tgcagagatt tgagtgtact tttcacactg agtgtggaaa gaggagaaga ataagtgtgg
901 aaatactcct ctactatttt gaagctggat aactgggaca gaaaagaact tatttaacag
961 aaatggcagc acttaaagac ttttggtgaa aagataagtt tggtcatact tctttgaggc
1021 aggatattaa agaagaaata ataactagac attggaaatg aaaaacaaaa attcagaaat
1081 agtgttctgg acttgattgt aaattcagga gtatttgctt ggggtcatag ttaaagccta
1141 gttctctcag gtaaatacag ggatcaataa aggctgaaaa ctaaggacac aaccttgggg
1201 cactgtctca ttttgtgggt agaaagcagt gtaaccaatg aagataaagg ataattgatc
1261 tcagcaggta agagtaaaaa aaaaattaaa tagaaaagaa aaaaacatat tggaagaatt
1321 ttttatggta aagaggatgt cgcatcttta gaatttcaat agcttgcagt tgttggacat
1381 gaaattgtgg tgggttatat ataactgcca agtatagaac ctttactgag aatattttgg
1441 acagaagaaa aataaagctt taactatagg aaatagaatt tatgaaagat ttattaaagt
1501 gaagtggtac ttgcctcact ttaacttacc aaatatataa cttaccatat ttataaactg
1561 aggataaatg agttttgatt agaaagagaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//