LOCUS BC020590 1780 bp mRNA linear HUM 17-NOV-2006
DEFINITION Homo sapiens anterior pharynx defective 1 homolog A (C. elegans),
mRNA (cDNA clone MGC:22065 IMAGE:4420942), complete cds.
ACCESSION BC020590
VERSION BC020590.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1780)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1780)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 27 Row: k Column: 9.
FEATURES Location/Qualifiers
source 1..1780
/db_xref="H-InvDB:HIT000038838"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22065 IMAGE:4420942"
/tissue_type="Adrenal cortex, carcinoma"
/clone_lib="NIH_MGC_84"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1780
/gene="APH1A"
/gene_synonym="6530402N02Rik"
/gene_synonym="APH-1A"
/gene_synonym="CGI-78"
/db_xref="GeneID:51107"
/db_xref="HGNC:HGNC:29509"
/db_xref="MIM:607629"
CDS 190..987
/gene="APH1A"
/gene_synonym="6530402N02Rik"
/gene_synonym="APH-1A"
/gene_synonym="CGI-78"
/codon_start=1
/product="anterior pharynx defective 1 homolog A (C.
elegans)"
/protein_id="AAH20590.1"
/db_xref="GeneID:51107"
/db_xref="HGNC:HGNC:29509"
/db_xref="MIM:607629"
/translation="MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLV
SLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLA
SLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTS
AFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIY
AVTVSMGLWAFITAGGSLRSIQRSLLCRRQEDSRVMVYSALRIPPED"
BASE COUNT 357 a 453 c 483 g 487 t
ORIGIN
1 aggaagtggc gcggaccttc atttggggtt tcggttcccc cccttcccct tccccggggt
61 ctgggggtga cattgcaccg cgcccctcgt ggggtcgcgt tgccacccca cgcggactcc
121 ccagctggcg cgcccctccc atttgcctgt cctggtcagg cccccacccc ccttcccacc
181 tgaccagcca tgggggctgc ggtgtttttc ggctgcactt tcgtcgcgtt cggcccggcc
241 ttcgcgcttt tcttgatcac tgtggctggg gacccgcttc gcgttatcat cctggtcgca
301 ggggcatttt tctggctggt ctccctgctc ctggcctctg tggtctggtt catcttggtc
361 catgtgaccg accggtcaga tgcccggctc cagtacggcc tcctgatttt tggtgctgct
421 gtctctgtcc ttctacagga ggtgttccgc tttgcctact acaagctgct taagaaggca
481 gatgaggggt tagcatcgct gagtgaggac ggaagatcac ccatctccat ccgccagatg
541 gcctatgttt ctggtctctc cttcggtatc atcagtggtg tcttctctgt tatcaatatt
601 ttggctgatg cacttgggcc aggtgtggtt gggatccatg gagactcacc ctattacttc
661 ctgacttcag cctttctgac agcagccatt atcctgctcc ataccttttg gggagttgtg
721 ttctttgatg cctgtgagag gagacggtac tgggctttgg gcctggtggt tgggagtcac
781 ctactgacat cgggactgac attcctgaac ccctggtatg aggccagcct gctgcccatc
841 tatgcagtca ctgtttccat ggggctctgg gccttcatca cagctggagg gtccctccga
901 agtattcagc gcagcctctt gtgccgacgg caggaggaca gtcgggtgat ggtgtattct
961 gccctgcgca tcccacccga ggactgaggg aacctagggg ggacccctgg gcctggggtg
1021 ccctcctgat gtcctcgccc tgtatttctc catctccagt tctggacagt gcaggttgcc
1081 aagaaaaggg acctagttta gccattgccc tggagatgaa attaatggag gctcaaggat
1141 agatgagctc tgagtttctc agtactccct caagactgga catcttggtc tttttctcag
1201 gcctgagggg gaaccatttt tggtgtgata aataccctaa actgcctttt tttctttttt
1261 gaggtggggg gagggaggag gtatattgga actcttctaa cctccttggg ctatattttc
1321 tctcctcgag ttgctcctca tggctgggct catttcggtc cctttctcct tggtcccaga
1381 ccttggggga aaggaaggaa gtgcatgttt gggaactggc attactggaa ctaatggttt
1441 taacctcctt aaccaccagc atccctcctc tccccaaggt gaagtggagg gtgctgtggt
1501 gagctggcca ctccagagct gcagtgccac tggaggagtc agactaccat gacatcgtag
1561 ggaaggaggg gagatttttt tgtagttttt aattggggtg tgggaggggc ggggaggttt
1621 tctataaact gtatcatttt ctgctgaggg tggagtgtcc catcctttta atcaaggtga
1681 ttgtgatttt gactaataaa aaagaatttg taaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1741 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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